K21413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21413

Determination of introduced cDNA(s)

  • J023007G19 - Rice Full-length cDNAs - Original: J023007G19

    full reading [+] show sequence

    Nucleotide sequence: J023007G19 - full reading 
    GCTTCCTCCC TCCTCTCCCT GCCATTGCTC CGCTCGGCTC GCTGCGAGGT 
    TGGTGCTCCG CGGGTCCACG CGGCGTTGCG AGAGTGAGAG AGAGGACGAG 
    GTCCTCCTCC TTCCGCGTCC CCCGCTCGCT GTTTCATCCG CTTCTTCCTC 
    CCTCCATCTT CGCTTGTGAG CTCCTCCGCG CGTCGCGAGC CTTACTGAAA 
    CTTCTGATCC CTCCGAAACC GAGAAAAGAG GGGAATCTGT GAAGAGATTT 
    TAGCAGCAGT GCAATGGAGG TATTTGGAAA ATCCGTGATT GCTGAGCCCA 
    GCAATGTGAT TTACTTGTCC AGTATTCTTA ACACAGAAGG GCCAATCCCT 
    AGTCACAAGT GTGACAAGAA TTGCCAGAAC GAGCACGTCT TTGGCAACAT 
    GTACCGTTGC AAACTGACCG GGACCACGCA CATCTGCGAC AAAAACTGTA 
    ACCAGAGGAT CCTCTACGAC AACCACAGCT CACTCTGCCG GGTCAGCGGG 
    CAGCTGTTCC CGCTCTCGCC GCTGGAGCAG CAGGCGGTGA GGGGGATCCG 
    GAGGAAGCAT GAGGTCGACA GCAACGAAGG GTGCTCCTTT AAGCGCAGGC 
    GAGGTGCACA ACTGCATCCA TCCCCTTTCG AGAGGTCCTA CACCGCTGTG 
    TCTCCAATCC CAAGCCAAGT TGGAGACGGC ATGGACCTGA GCTAGAGATA 
    ACGAGAATCC GTCTTTTCTT GCCCACAGCT GGCTAATGCC GTTGTTTCGA 
    CCCCTTTCTC CCTTTGACAG GATGGAACTA TAAGAGCTTC CTTCTTTATA 
    GACTTACGAA GGGATATGAG ACTCTCCTTG GATGCACCGA ATAAATGTCT 
    ATGTAGTATC AGTTCTAATT TATGGGACCT TGTTGTAACT CGTAATTTTG 
    GTTGAACCGC CTATTCTGAA TTGCATAGTA CTTTCTGATA ATCATTTGAT 
    GCTATCGCTT AGATTATTTT CCT

    Gene models with high sequence identity

    1. AT5G24610.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); ...
      E-value: 2e-49; Score: 192.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G24610.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR