K21333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21333

Determination of introduced cDNA(s)

  • J023031F07 - Rice Full-length cDNAs - Original: J023031F07

    full reading [+] show sequence

    Nucleotide sequence: J023031F07 - full reading 
    GTGGCAGCAG CTGAGGCTGA GCGACCGTCC CCCGACGCCG ACGCCGACCC 
    CCGTCTCGTG AGGGAGGGAG GGTCATCGCC ATCGAATCCC AAAAAATCAC 
    CCGCCGCCGC ATCCTCGAAT CCAATCATTC AATCAAGGAG GAGGAGGAGG 
    ATTTGGATTT GGATTTGGAT TTGGAATTAG GGTTAGTGAT TCCCCATTTT 
    TTTGAGGGCA ATCGATCGAG CTTAGCTAGG GTTGGATGCG ATGACGGCGG 
    CGGCGTCGTG GTCCCGGTCG GTGACGGAGA CGGTGCGGGG GTCTCACCAG 
    TACACGGTGA AGGGGTTCTC GATGGCGAAG GGCGTAGGGG CCGGGCGGTA 
    CGTGAGCAGC GACACCTTCG CGGTGGGCGG CTACCACTGG GCCGTCTACC 
    TCTACCCCGA CGGCAAGAAC CCCGAGGACA ACGCCAACTA CGTCTCCGTC 
    TTCGTCGCCC TCGCCTCCGA CGGCGCCGAC GTCCGCGCCC TCTTCGAGCT 
    CACCCTCCTC GACCAGTCCG GCCGCGGCCG CCACAAGGTC CACTCCCACT 
    TCGACCGATC CCTCCAGGCC GGACCCTACA CCCTCAAGTA CCGAGGCTCC 
    ATGTGGGGCT ACAAGCGCTT CTACCGAAGA TCACTCTTAG AATCATCCGA 
    CTTTCTCAAG GACGACTGCC TCGTTATGAA CTGCACTGTA GGCGTCGTCA 
    AGAACCGTCT CGAAACACCA AAGAACATCC ACATCAATAT TCCTCCATCC 
    GACATGGGCC GTTGCTTCAA CAACCTCCTC AATCTCCGCA TCGGCTGTGA 
    CGTATCTTTT GAGGTGGGTG ATGAAAGAGT CCAGGCGCAC AAGTGGATTC 
    TTGCTGCCCG CTCCCCTGTA TTCAAAGCCC AATTCTTTGG TCCTATTGGG 
    AATCCTGACC TACACACAGT CATTGTCGAG GATGTAGAAC CTCTTGTCTT 
    CAAGGCAATG GTGAATTTCA TATACTCTGA TGAACTTCCT AGTATTCATG 
    AACTAGCTGG ATCTGTCTCA ACTTGGACAT CGACAGTAGT AGTACAGCAT 
    TTGTTGGCGG CTGCTGACAG ATATGGACTA GATCGGCTAC GTCTGCTATG 
    CGAGGAAAAG TTATGTGATG AACTCACTGC TGAAACAGTT GCAACAACTT 
    TAGCCCTAGC TGAACAACAT CATTGTACTC AGCTGAAATC TGCTTGTCTG 
    AAGTTCACTG CTGTTCGGGA AAATCTGGGA GCTGTGATGG AGACAGAAGG 
    ATTTAATTAC TTGGAGGAGA CATGCCCGTC CCTGCTATCT GACTTGTTAG 
    CTACTGTCGC AGTAGTGGAT GATGATGCTG CGTCATTCAA CCGGAAGAGG 
    GGAGTCGGTG GTAACGAAGG AGCGAATCCT GTGGAGAGCG TGGAGGCTAG 
    TGATAGGCGC ATCCGCAGGA GGGTTTAGCC GGGTTAGAAC TAATGTAGGC 
    TTTCTTCTTG GTTCCTCCTC TCTATGCTTG CCATCAACTG TACACTATGA 
    TCGTAGTTTG TGTGATGTGC TGTCATGTTA TTAGTGGTGA AAGTTTAATT 
    TGGACACCGT TAACCAACCT CTTGCCGTGT GAATAATTTC CTATTTTGAC 
    TACGCCGTTT CGCAGCAGAG ATTTTAACCT TGCCAGTGGA TTGGATGTTA 
    TGATTGGTAT CTGCTGATTA TATGTGGTGT TAGCATTTCA ATGGATGCCA 
    ATTTGCAATG CC

    Gene models with high sequence identity

    1. AT2G39760.1 [+] show detail - BTB/POZ/MATH-domains containing protein
      E-value: 7e-122; Score: 434.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam BTB/POZ 5e-25
    HMMPfam MATH 7.7e-08
    Gene3D TRAF-type 9.3e-07
    Gene3D BTB/POZ fold 2.4e-24
    superfamily TRAF-like 6.5e-38
    superfamily BTB/POZ fold 3.8e-29
    ProfileScan BTB/POZ-like 17.541
    ProfileScan MATH 24.584
    HMMPanther BTB-RELATED 2.1e-75
    HMMPanther Kelch related 2.1e-75
    HMMSmart MATH 1.3e-08
    HMMSmart BTB/POZ-like 1.1e-24

    See the detailed result >

    AT2G39760.1

    Model type
    Protein coding
    Short Description
    BTB/POZ/MATH-domains containing protein
    Computational Description
    BPM3; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 6744 Blast hits to 6554 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 4817; Fungi - 136; Plants - 1477; Viruses - 34; Other Eukaryotes - 280 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR