K21118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21118

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21118

Determination of introduced cDNA(s)

  • J013002D12 - Rice Full-length cDNAs - Original: J013002D12

    full reading [+] show sequence

    Nucleotide sequence: J013002D12 - full reading
    GGCAAAATCC TCCTCCCGAT CTCCACCACC ACTTTCCCAT TGACCGCGGC 
    GGGAAAGGGC CTTCGAGACT TGGGAGGTTG GAGCGAGCAA GCTCGGCCAT
    GGCGAAGCTC TCCTGCCTTC TCATCGTCTC CTTCGCCGTC GTCGCGGCGT
    TGGCGGCCAC GGACGACGAC GCGGCGGCGG CGGCTGAGGG GATCACGGTG
    GCGGAGGCGT CGTCGGACCC GGAGAACAAG TGCGTGTACA CGATATACGT
    GCGGACGGGG ACGATCTGGA AGGGCGGGAC GGACTCGGTG ATCGGCGTGA
    CGCTGCTGGG CGCCGACGGC TCCGGGGTGC GGATCCGCGA CCTGGAGCGG
    TGGGGCGGCC TCATGGGCGA CGGCCACGAC TACTACGAGC GCGGCAACCT
    CGACATCTTC AGCGGCCGCG GCCCCTGCAT GCGCCAGGCG CCGTGCCGGA
    TGAACCTCAC CTCCGACGGC ACCGGCCCGC ACCACGGCTG GTACTGCAAC
    TACCTCGAGG CCACCGTCAC GGGTCCCCAC CTCGGCTGCG CGCAGCAGCT
    CTTCACCGTC GAGCAGTGGC TCGCCACCGA CGCATCGCCC TACCGCCTCT
    ACGCCGTCGT CGACAACTGC AACAAGGCCA AGGACGCCGC CGCCGCCGAC
    GCCGACGAGC CGAGGGTCAC CGTGCTGTAA ATAAATCGTA GATTCTCTTT
    GGATTCCCGT GTAATTATGT ACCTTACGCG TATGTGGTCT ACTGCTCGAC
    TGCTCGTGCT GTCGTGCATT GCAGTGATTG ATCCTTTTTT TTACATTGAG
    GGGAGGATGC TAAAATAATT ATACGATTTT AAGAGGGTAA TAAGATGAAA
    CCAGCGTTGG ATCGGTCGGA CGATCCGGTG CTCACTCCAG TTGGT

    Gene models with high sequence identity

    1. AT4G39730.1 [+] show detail - Lipase/lipooxygenase, PLAT/LH2 family protein
      E-value: 8e-45; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Lipoxygenase, LH2 2.4e-07
    ProfileScan Lipoxygenase, LH2 19.342
    superfamily Lipase/lipooxygenase, PLAT/LH2 2.1e-23
    HMMPfam Lipoxygenase, LH2 5.9e-11

    See the detailed result >

    AT4G39730.1

    Model type
    Protein coding
    Short Description
    Lipase/lipooxygenase, PLAT/LH2 family protein
    Computational Description
    Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT2G22170.1); Has 247 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 94; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR