K20646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20646

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20646

Determination of introduced cDNA(s)

  • J033048B22 - Rice Full-length cDNAs - Original: J033048B22

    full reading [+] show sequence

    Nucleotide sequence: J033048B22 - full reading 
    GGAACCCCCT CTCTCCCATC GCCGCCGCCG CCGCCGCCGA CACAGCCGCT 
    GACCTCGCCG CCGCCGACGC CGATGGAGAT GGCCGCCCCC GTCTCCCCCG 
    CGCCGCGCAC CGTCGAGGAC ATCTTCAAGG ACTTCTCCGG CCGCCGCGCC 
    GGCCTCGTCC GCGCCCTCAC CGTCGATGTG GATGAGTTCT ACGGATTCTG 
    CGACCCAGAG AAGGAGAATT TGTGCCTGTA CGGGCACCGG AACGGGCGGT 
    GGGAGGTGGC GCTGCCGGCG GAGGAGGTGC CGCCGGAGCT GCCGGAGCCG 
    GCGCTCGGGA TCAACTTCGC CAGGGACGGG ATGCACCGCC GCGACTGGCT 
    CTCGCTCGTC GCCGTCCACT CCGACTCGTG GCTGCTCTCC GTCGCCTTCT 
    TCTTCGGCGC GCGCCTCAAC GGCAACGAGA GGAAGCGCTT ATTCAGCTTG 
    ATCAATGACC ATCCAACCGT GCTTGAAGCA CTGTCTGATA GGAAGCATGG 
    AAGGGATAAT AAATCTGGTG CCGACAATGG CAGCAAATCC AGGCACTCAG 
    GAAAGCGAGC AAATGACGTG CAGACAAAAA CCTCGAGGCC AGCAGTTGTT 
    GACGATGGGT ACGATGAAGA AGAACACAGT GAAACCCTAT GTGGAACCTG 
    CGGTGGCCGC TACAACGCCA ACGAGTTTTG GATTGGGTGC GACATTTGCG 
    AGCGGTGGTT CCACGGCAAA TGCGTTAGGA TAACACCAGC GAAAGCGGAA 
    CACATAAAGC ACTACAAGTG CCCTGATTGC AGCAGCTCCA AGAAGAGTAG 
    GCAATAAAAA CCATGGAGCT GCTGCTGTGG CTCTCTACTG CTGACTAAGC 
    TGATCAATCA AATGATACTT GCCATCCCTC TTCCAGTCCC AAGTTGGCGG 
    CAGATGTGAA GAATTTGCTC TAGAACATTG CGCACTGTTG TGGTAGATGC 
    TGGAAAACAA AAAAGAAGAA ACTTTACAGG ATAGTTTGTT TCATAAACTG 
    GTCGGTTACT GTTGTGGTTG TTCATTTGAG ATATGGATAC TGTTACATTG 
    TAGCCTTTAG AGGAAATTTG TTCATGCCTT GTTTCTAATT TGGTATGTCC 
    TTCCCTTGCT GCATGACATT GATTTCTCTC TACAAGTTTC TGTCTGTCAC 
    TGTGC

    Gene models with high sequence identity

    1. AT3G11200.1 [+] show detail - alfin-like 2
      E-value: 2e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 1.6e-11
    HMMSmart Zinc finger, PHD-type 2.1e-09
    PatternScan Zinc finger, PHD-type, conserved site 0
    superfamily Zinc finger, FYVE/PHD-type 2.3e-12
    HMMPfam Protein of unknown function DUF3594 2.9e-70
    HMMPfam Zinc finger, PHD-finger 3.3e-10
    Gene3D no description 6e-16
    ProfileScan Zinc finger, PHD-finger 9.25

    See the detailed result >

    AT3G11200.1

    Model type
    Protein coding
    Short Description
    alfin-like 2
    Curator Summary
    AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR