K20519

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20519

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K20519

Determination of introduced cDNA(s)

  • J023036G13 - Rice Full-length cDNAs - Original: J023036G13

    full reading [+] show sequence

    Nucleotide sequence: J023036G13 - full reading 
    GTCTCTCATC GCCACCACCA CCTCCCACTC CAAGACGCTA GCTGCATTGT 
    AGTGAGAGAG AGAGGCGGCC ATGGCGCTGG CGTCGCTGCC GAAGGTGGTG 
    ATGGGGTCGG TGGCGTTCGG TGTGTTCTGG ATGCTGGCGG TGTTCCCGTC 
    GGTGCCGTTC CTGCCGATCG GGCGGACGGC GGGGGCGCTG CTGGGCGCGG 
    TGCTGATGAT CGTGTTCCAC GTGATCAGCG CCGACGACGC CTACGCCTCC 
    ATCGACCTCC CCATCCTGGG CCTCCTCTTC GCCACCATGG TCGTCGGCGG 
    CTACCTCAAG AACGCCGGCA TGTTCAGGCA CCTGGGCCGG CTGCTGGCGT 
    GGCGGAGCCA GGGCGGGCGC GACCTCATGT GCCGCGTCTG CGTCGTCACC 
    GCGCTCGCCA GCGCGCTCTT CACCAACGAC ACCTGCTGCG TCGTCCTCAC 
    CGAGTTCGTG CTCGAGCTCG CCGCCGAGCG CAACCTCCCG GCGAAGCCGT 
    TCCTGCTCGC GCTCGCCACC AGCGCCAACA TCGGCTCCAG CGCGACGCCC 
    ATCGGCAACC CGCAGAACCT GGTCATCGCC TTCAACAGCA AGATCTCCTT 
    TATTTCCTTC CTCCTCGGCA TCCTCCCCGC CATGCTCGCC GGCATGGGGA 
    TCAACATGCT CATGCTGCTC TGCATGTACT GGAAGGAGCT CGACGGCGGC 
    GCCTGCAGCC CCGACGAGGT CGCCGCCGGC AAGCAGATGG AGGCCATCGA 
    GGAGGGCCGC CGCACGGCGC TCAACAACAA CAAGAAAGAC GACGGCGACG 
    CCGCCACCCC CGCATCGCCG GAGGACGACG ACGGCGGCGA CGCCGAGTCG 
    ATGATGTCGG AGAACATCTC GACGAAGCAC CGGTGGTTCA TGCAGTGCTC 
    GGAGCACCGG CGGAAGCTGT TCCTCAAGAG CTTCGCGTAC GTGGTCACCG 
    TCGGCATGCT CGTCGCCTAC ATGCTCGGCC TCAACATGTC GTGGACCGCC 
    ATCACGACCG CCATCGCCCT CGTCGTCGTC GACTTCCGCG ACGCCGAGCC 
    ATGCCTCGAC AAGGTGTCGT ACTCGCTGCT GGTGTTCTTC TCGGGGATGT 
    TCGTGACGGT GAGCGGGTTC AACAAGACGG GGCTACCCGG GGCCATCTGG 
    AACGTGATGG CGCCCTACTC AAAGATCAAC CACGTCACCG GCGTCACCGT 
    CCTCTCCGTC ATCATCCTCC TCCTCTCCAA CCTCGCCTCC AACGTCCCCA 
    CCGTGTTGTT GATGGGGGAT GAGGTGGCGG CGGCGGCGGC GACGATATCA 
    CCGGCGGCGG TGACGCGGTC GTGGCTGCTG CTGGCGTGGG TGAGCACGGT 
    GGCGGGGAAC CTGTCGCTGC TGGGGTCGGC GGCGAACCTG ATCGTGTGCG 
    AGCAGGCGAG GCGGGCGACG CGCAACGCCT ACGACCTCAC CTTCTGGAAC 
    CACGTCATCT TCGGACTCCC ATCCACCCTC GTCGTCACCG CCATCGGCAT 
    CCCTCTCATC GGCAAGATCA ACATCTAGTA TTCATTAAAT TAATTAATTA 
    ATATAATCCG GCTAGCTACT ATCTACAACG ATCAGAAGAA GGCAGAATGA 
    TCGAGCATGC AAGAATTCAT GCAAATTACA AGGGATGTGA TATGATCATA 
    TTAATCCAAG GAAGCTAGTA TGATGATTAA GTTTGTGATC AAGCCGTACT 
    ATGTGCATGC CAATGCATGC ATGTGTTCAA GTGTACACTA TGCTTGGTCT 
    CAAGTGGATC AATTATATTG GTGCCATGCT CTGGGATAAT TAGTTAATTA 
    GTACTTATGA TAAGCTAGAG AGGAGGATGC ATTATATTGG TGCATGGTAA 
    TAAGGCAAAT GAACAGCAGA ATGCATGTAT ATATGTACTG TATCCCTGTT 
    GCCAGCTGGT CTCTGTTTGA ATGAAGTTGA TAGCAACAAA GCTAGCACTA 
    GCGAATGAGC TAGTGACTCA AGTACGCATG CCGGATTACC TCATTGCTCC 
    AAACTTGCAA TCAGTTTTGA ACTTTTAATA AAGTTAATTT GGCTTTGTGC 
    ACTTGTC

    Gene models with high sequence identity

    1. AT1G02260.1 [+] show detail - Divalent ion symporter
      E-value: 1e-140; Score: 497.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Divalent ion symporter 6e-101
    HMMPanther ARSENITE TRANSPORT PROTEIN 1.5e-193
    HMMPanther CATION TRANSPORTER RELATED 1.5e-193

    See the detailed result >

    AT1G02260.1

    Model type
    Protein coding
    Short Description
    Divalent ion symporter
    Computational Description
    Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR