K20503

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20503

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20503

Determination of introduced cDNA(s)

  • J013112I11 - Rice Full-length cDNAs - Original: J013112I11

    full reading [+] show sequence

    Nucleotide sequence: J013112I11 - full reading 
    TTTGCTGATT TATCTTTAAC TCTGGCAAGG CTCCCGGTAT TCTACAAACA 
    TAGGGACTTC CTGTTTTATA GGCCATGGAC TTTTGCACTT CCAAATGTTC 
    TCGTGAGAAT CCCTAGCTCC CTGTTTGAGT CGATAATTTG GGTTGCAATA 
    ACCTACTACA CCATGGGGTT TGCCCCTGAA GCTAGCAGGT TCTTCAAACA 
    CCTGCTTGTA GTCTTCATGC TTCAGCAGAT GGCTGCAGGA CTGTTCAGAG 
    TCACCGCTGG GTTATGCAGG ACTGTTGTGG TAACGAACAC TGCAGGGTCT 
    CTTGCAGTTC TGATCATGTT TGTGCTTGGA GGATTCATCC TACCAAAAGA 
    TGCAATCCCT AAATGGTGGG TGTGGGCTTA CTGGTGTTCA CCCCTTACTT 
    ATGCATACAT TGCCTTTTCT TCCAATGAAA TGCATTCTCC AAGGTGGATG 
    GACAAATTTG TACCTGATGG AAAGAGATTG GGAGTGGCAG TTCTAGAAAA 
    TTCAGGTGTC TTCACCAATA AGGAATGGTA CTGGATTGCA ACTGGCGCCC 
    TTCTAGGGTT CACCATTCTG TTCAACGTGT TATTCTCGCT ATCACTTATG 
    TACCTGAACC GTAAGTAGCT ACACTGTACT TAGTAATAAC CTGTTATGAG 
    TTGCATCTGA CAACAGATTA TTTCCTTAAC TTCGCCGATT GGCCTTTTCA 
    AGTGAGCAGG TAGTGCAATT AGTATAGTAT TACATATATA GTGCCTTTGT 
    ATGAATGTTC TCTGCAATTC CAAATATTGA TTCATGTAGA TATTGAAAAT 
    CTAAAACTTT TAACTTCATA AATTTAAAAT CATAGATGCC CAAATTATAA 
    GATTGTATTC TGCAAGCCCA ATTAAATTCT GGATTCTTGA TTCCATTTTT 
    TATTTCTTTT ACAGTTCTTG GGAAGTATTT CTTTCATTAG CACACTTCTT 
    TTTTTAGATA CTTCTCTCCA GCTATATACC TAAAAAGAAT GTTTTGGTCA 
    TTTTGTCCTT TCTTATCAGC TGTAAATAAA TACATTTGAT ACGTATAATA 
    TATCCAATGT CTGTGATAAA TAGGTATTGT CCTTCAATTT CAATGACATA 
    TTTTTGACAT TTTGTAACGG CCATTTATTC TATTCCTTGA ATTAGCTGTT 
    GGAAAACCAC AATCCATCCT CCCTGAAGAA ACCGATAGTC AGGAGAACAT 
    TCAGGAAGGA AAAAACAAGG CACATATAAA ACAGATAATT ACAGTTGAAA 
    CACCAGAACC TGTATCCCCG AACTCAATTA TCACCCTGGA TAAGGTGATT 
    CAACAATTGC GTGGATATTC CGCAAACACT TCTGATAGGT CGCGCTCATA 
    CATTAATGCT GCTGGCAGAA CTGCTCCAGG AAGAGGGATG GTTCTTCCAT 
    TTGAACCGCT CTACATGTCC TTTAATGAGA TAAATTACTA TGTTGATATG 
    CCTTTGAGTC AGGGAGTAAC TGCCGATAAG CTTCAACTGC TGTCAGGGAT 
    ATCTGGAGCT TTTCGACCTG GTGTTCTGAC TGCTCTTATG GGTGTTAGTG 
    GGGCTGGAAA GACTACCCTC ATGGATGTCT TATCTGGGAG AAAGACAGGT 
    GGATATATTG AAGGGGAAAT CTATATATCG GGTTACCCAA AGAACCAAGC 
    AACATTTGCT AGAATATCAG GCTACTGTGA GCAAAATGAC ATCCACTCCC 
    CACAGATTAC TGTAAGGGAG TCCCTACTTT TCTCTGCTTT CCTGCGCCTG 
    CCTAAGGAGG TCAATGATCA AGAAAAGAAG ATCTTTGTGG ATGAAGTTAT 
    GGAACTGGTT GAGCTTACTG GTCTGAAAGA TGCTATTGTG GGCCTCCCTG 
    GTGTGAATGG GCTGTCAACA GAACAAAGAA AGAGGCTGAC AATCGCTGTA 
    GAGCTTGTGG CAAACCCCTC AATTATCTTT ATGGATGAAC CAACTTCTGG 
    TCTTGATGCA AGAGCGGCTG CTATTGTTAT GAGAACTGTA CGTAACACTG 
    TCAATACTGG AAGAACCGTT GTATGCACTA TTCATCAACC AAGCATTGAC 
    ATTTTTGAAG CTTTTGATGA GTTGTTGCTA CTAAAAAGAG GAGGCCAGGT 
    TATATATTCT GGACCATTGG GTACAAATTC TCATAAAGTT GTTGAGTACT 
    TTGAGGCAAT TCCTGGAGTC CCAAAGATCG AAGAGAATCG CAACCCAGCT 
    ACATGGATGC TGGATGTAAG CTCAGCTGCA TCAGAAGTTC GATTGGAAAT 
    TGATTTTGCT GAATATTACA GGTCATCGAC TATGCACCAG CGAACCAAAG 
    CATTAGTAAA AGAACTGAGC AATCCACCTC CTGGTTCCGA TGACCTCTAC 
    TTCCCTAGTC AATACTCGCA GAGCACCTTT AATCAGTTCA AGCTCTGCCT 
    CTGGAAACAA TGGTGGACTT ACTGGAGAAG CCCTGATTAT AACCTTGTCA 
    GGATTTTCTT TGCATTATTT ACTGCTTTAA TGTTGGGGAC TATATTTTGG 
    AGGGTTGGTC ACAAGATGGA GAGTTCAAAA GATCTCTTGG TCATCATTGG 
    ATCAATGTAT GCTGCCGTCT TGTTTGTTGG TTTTGAGAAT TCTGTAACTG 
    TTCAACCCGT TGTTGCTGTG GAAAGGACTG TATTTTACAG AGAGCGGGCA 
    GCTGGAATGT ACTCGGCTAT ACCATATGCT CTAGCTCAGG TTGTTGTGGA 
    GATACCGTAT GTGTTCGTTG AGACTGTCAT TTACACACTT ATTGTCTACC 
    CAATGATGTC GTTCCAATGG ACACCAGCAA AATTCTTCTG GTTCTTCTAT 
    GTTTCATTCT TCACCTTCCT CTATTTCACT TACTATGGCA TGATGAACGT 
    CTCCGTATCA CCAAACCTTC AGGTTGCTTC CATATTGGGT GCTGCCTTTT 
    ACACCCTTTT CAATCTCTTT TCAGGATTCT TCATCCCAAG ACCGAAAATC 
    CCAAAATGGT GGGTTTGGTA CTATTGGCTT TGTCCAGTGG CATGGACAGT 
    ATACGGCCTT ATTGTGTCAC AGTACGGAGA TGTGGAGGAT TTTATCACGG 
    TCCCTGGACA ATCTGATCAG CAAGTCAGAC CTTTCATCAA GGACTATTTT 
    GGCTATGACC CGGACTTCAT GGGCGTCGTG GCTGCAGTGC TGGCTGGCTT 
    TACTGTCTTC TTCGCTTTTA CATATGCTTA CTCCATCAGA ACCTTAAATT 
    TCCAGCAGAG ATAGAAAATC CTGCCATGTA TTGCTGTGTG TTGCAGTTCA 
    CATGTAAGAT GTAACGCTAG TTTTCACCCA GGTATATATT CTATCTTATT 
    GATTGC

    Gene models with high sequence identity

    1. AT3G16340.2 [+] show detail - pleiotropic drug resistance 1
      E-value: 0; Score: 842.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ABC-2 type transporter 1.6e-31
    HMMPfam Plant PDR ABC transporter associated 4.4e-23
    HMMPfam ABC-2 type transporter 2.6e-55
    HMMPfam ABC transporter-like 8e-11
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-41
    ProfileScan ABC transporter-like 14.886
    Gene3D no description 5.5e-30
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER (PDR) 1.4e-96
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 1.4e-96
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER (PDR) 0
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 0
    HMMSmart ATPase, AAA+ type, core 1.3e-10

    See the detailed result >

    AT3G16340.2

    Model type
    Protein coding
    Short Description
    pleiotropic drug resistance 1
    Computational Description
    pleiotropic drug resistance 1 (PDR1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1).
    Link
    InterPro Scan - TAIR