K20309

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20309

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K20309

Determination of introduced cDNA(s)

  • J013000P03 - Rice Full-length cDNAs - Original: J013000P03

    full reading [+] show sequence

    Nucleotide sequence: J013000P03 - full reading 
    GCTCTGCGCC TCCCTCCTCC GCGCCTCCGC CATGGCCTCC CTCGCCTCCG 
    CCTCCGCATC CACCTCCCTG GTCTTCTCCA CCTCCTCCTC CAAGCCGCGC 
    CTCGGCTCCT CCGTCGGATT CTCCTCGCCC GCGCGGTTCC GGCGCACGGC 
    GGCGGCGGCG GCGTCCAGGG GCACGGGGCG GCGCGCGGGG CTGCTGGTAG 
    TGCGCGCGGC GAGGGGGAAG TTCGAGCGGA CCAAGCCGCA CGTCAACATC 
    GGCACCATCG GCCACGTCGA CCACGGGAAG ACTACGCTGA CGGCGGCGCT 
    CACCATGGTG CTCGCCTCCG TGGGCGGGAG CGCCCCCAAG AAGTACGACG 
    AGATCGACGC GGCGCCCGAG GAGCGCGCCC GCGGCATCAC CATCAACACC 
    GCCACCGTCG AGTACGAGAC CGAGACCCGC CACTACGCCC ACGTCGACTG 
    CCCCGGCCAC GCCGACTACG TCAAGAACAT GATTACCGGC GCCGCGCAGA 
    TGGACGGCGC CATCCTCGTC GTCTCCGGCG CCGACGGGCC CATGCCGCAG 
    ACCAAGGAGC ACATCCTGCT CGCCAAGCAG GTCGGTGTCC CCAAGATTGT 
    TGTCTTCCTC AACAAGAAGG ACCAGGTCGA CGACGAGGAG CTGCTCCAGC 
    TCGTCGAGCT CGAGGTCCGC GAATTGCTCT CCTCCTACGA GTACGATGGC 
    GACGAAGTGC CCATCGTCGC TGGCTCCGCG CTCAAGGCGC TCGAGAACCT 
    CATGGCCAAC CCTGCCATTA AGCGCGGCGA TGATGAGTGG GTGGACGGGA 
    TCTTCTCGTT GATTGATTCC GTGGATAACT ACATCCCTGT CCCACAGCGC 
    CAGACCGACC TCCCGTTCTT GCTTGCTGTT GAGGATGTGT TCTCCATCAC 
    CGGTCGTGGT ACCGTTGCCA CTGGCCGTAT TGAGCGTGGC ACCGTCAAGG 
    TTGGGGACAC GGTCGATATC GTCGGTATCC GGGAGACTCG CAACTGCACG 
    GTGACTGGTG TTGAGATGTT CCAGAAGACC ATGGATGATG CGATGGCTGG 
    GGACAATGTC GGCCTGCTTC TCCGAGGTAT GCAGAAGGAT GATATCGAGA 
    GAGGCATGGT GCTTGCGAAG CCTGCTTCCA TCACGCCACA CACCAAGTTT 
    GATGCGGTTG TGTATGTCCT GAAGAAGGAC GAGGGTGGAC GGCACTCACC 
    GTTTTTCCCT GGTTACCGCC CTCAGTTCTA CATGCGGACT ACCGATGTGA 
    CGGGGAATGT CACAAAGATT ATGAACGACA AGGACGAGGA GGCGAAGATG 
    TGCATGCCTG GTGACCGTGT CAAGATGGTT GTGGAGCTCA TCCAGCCCGT 
    CGCTTGTGAG CAGGGAATGA GGTTTGCCAT CCGTGAGGGT GGAAAGACCG 
    TCGGTGCCGG CGTCATCAAT ACGATCTTGA AGTAAACTGG ATGGAGCATA 
    TCCACCGTGA GAATTTTCCT TGTTTACTCT TTGCGAAATG CTCTGTAGTT 
    GTTATTACGC GTTGAGTTTT AGGGGTTGCT CATGTGAAAT TGTAGTATGG 
    CACTTTTCTC TTCAAGTGAA TTTGCATACT TTGTGATATT CACGACAAAG 
    ATACATCTGT TTGCAACTAA TTTGGCTATG CAGTGCCATC TACTGTCATG 
    TGTTCAATTG TTCATCTATT GAGCTTGATG CCACATGGAA TTGTAGAGTT

    Gene models with high sequence identity

    1. AT4G20360.1 [+] show detail - RAB GTPase homolog E1B
      E-value: 0; Score: 649.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein synthesis factor, GTP-binding 5.6e-62
    HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 1e-38
    HMMPfam Translation elongation factor EFTu/EF1A, domain 2 3.2e-18
    superfamily P-loop containing nucleoside triphosphate hyd 6.4e-64
    superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 6.8e-35
    superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 6.4e-33
    Gene3D no description 8.3e-58
    Gene3D no description 8.6e-46
    Gene3D no description 5.6e-16
    HMMTigr Translation elongation factor EFTu/EF1A, bacterial/organelle 2.6e-266
    HMMTigr Small GTP-binding protein 1.2e-12
    FPrintScan Protein synthesis factor, GTP-binding 2.6e-24
    FPrintScan Protein synthesis factor, GTP-binding 2.6e-24
    FPrintScan Protein synthesis factor, GTP-binding 2.6e-24
    FPrintScan Protein synthesis factor, GTP-binding 2.6e-24
    FPrintScan Protein synthesis factor, GTP-binding 2.6e-24
    HMMPanther Translation elongation factor EFTu/EF1A, bacterial/organelle 3.7e-248
    HMMPanther TRANSLATION FACTOR 3.7e-248
    PatternScan Protein synthesis factor, GTP-binding 0
    Coil coiled-coil 0

    See the detailed result >

    AT4G20360.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog E1B
    Computational Description
    RAB GTPase homolog E1B (RABE1b); FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT4G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR