K19738

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19738

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19738

Determination of introduced cDNA(s)

  • J023132A06 - Rice Full-length cDNAs - Original: J023132A06

    full reading [+] show sequence

    Nucleotide sequence: J023132A06 - full reading 
    TTGGCGTCCA ACGTGAGCAA CATCACCGAA GCCGGTCGCT GATCGGAGGA 
    AAACCCAAAA AAGAAAGAAA AAAACGACGA AATGGCTTCC TCCCCGTATC 
    ACGCCGCCGT CGGTGTCGCC GTCCTTGCCA TCCTCCTCGC CGCGCCGGCT 
    GCGGAGGCCG GGGCACCTAC CGCCGCGCCG TTGGCCAACT ACTCCCTCGA 
    GGACGCGTGC AAGAAGACCG GCCCACACTA CGGCCTCTGC ATCGTGACGC 
    TCTCCGCCGA CCGGTCCGCC AAGTCGTCGG ACACGGTGGG GCTCGCCAGG 
    GTGGCCGTCC TGGCGGCGCA GAAGAACGCG TCGGAGACGG CCACCTACCT 
    CTCCAGCATC TACGACGACG ACAGCATCGA GAAGAAGACG GTGCAGCTGC 
    AGCAGTGCCT CGAGGACTGC TCCGAGAGGT ACGAGGCGGC GGTGGAGCAG 
    CTGACGGACG CGACGGTGGC GCTGGACACG GGGGGGTACG AGGAGGCGAT 
    GGCGCTGGTG GCGGCGGGGC AGGCGGAGGT GAAGATGTGC CAGAGGGGGT 
    TCAAGGCCGT GCCGCAGCAC CGGAACATCC TCACCTTGCG CAACCGCGAG 
    GTCGACCAGC TCTGCAGCAT CGCCTTCACC ATCACCAAGC TGATCCGCGT 
    GTCACCGAGC GCTGAAGAAT AGCTTTCTCT TCTTCCTTTT ATCCCCTGGA 
    TATTCTTTTT TATTTTTTCG ACGACAGGGG TAATCTGGGA TTCCATGGTT 
    GGAAGATTAG CATGTTTGTT GATGGCTTTG AATTGGATTG GTAATTGCTG 
    TTTGCATCAG CAGACAACAT CCTAGGCGCT GGCGGTGGTG GAACTGTTGT 
    TGGGTTCATA CGATCAATGT ATAGCACATT CTTGATCTTA AAAAGAGCAT 
    TGCTG

    Gene models with high sequence identity

    1. AT5G64620.1 [+] show detail - cell wall / vacuolar inhibitor of fructosidase 2
      E-value: 1e-11; Score: 67.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pectinesterase inhibitor 3.8e-30
    HMMTigr Pectinesterase inhibitor 1.5e-18
    Gene3D Pectinesterase inhibitor 3.8e-21
    HMMPfam Pectinesterase inhibitor 1.2e-33
    HMMSmart Pectinesterase inhibitor 1.1e-17

    See the detailed result >

    AT5G64620.1

    Model type
    Protein coding
    Short Description
    cell wall / vacuolar inhibitor of fructosidase 2
    Curator Summary
    Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.
    Computational Description
    cell wall / vacuolar inhibitor of fructosidase 2 (C/VIF2); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: cell wall / vacuolar inhibitor of fructosidase 1 (TAIR:AT1G47960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR