K19133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19133

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19133

Determination of introduced cDNA(s)

  • J013026J15 - Rice Full-length cDNAs - Original: J013026J15

    full reading [+] show sequence

    Nucleotide sequence: J013026J15 - full reading 
    GAAGTGCATC AGCAGCGAGT TCCAGCCATG GCAGCAGACA AGGGAGTGAA 
    GGTGTTCGGC ATGTGGGCGA GCCCCATGGC GATCCGTGTG GAGTGGGCGC 
    TCCGGCTCAA GGGCGTCGAC TACGAGTACG TCGACGAGGA CCTCGCCAAC 
    AAGAGCGAGG CGCTGCTCCG GCACAACCCG GTGACCAAGA AGGTGCCCGT 
    GCTGGTCCAC GACGGCAAGC CTCTCGCCGA GTCCACCGTC ATCGTCGAGT 
    ACATCGACGA GGCCTGGAAG CACGGCTACC CCATCATGCC CTCGGACCCC 
    TTCGACCGTG CTCAGGCGAG GTTCTGGGCC AGGTTCGCTG AAGAGAAGTG 
    CAACGCTGCT CTGTACCCGA TCTTCATGAC GACCGGAGAG GAGCAGAGAA 
    AGCTGGTGCA CGAGGCCCAG CAGTGCCTGA AGACGCTGGA GACGGCCCTG 
    GAGGGGAAGA AGTTCTTCGG CGGCGACGCC TTCGGCTACC TTGACATCGT 
    CACCGGGTGG TTCGCCTACT GGCTGCCGGT CATCGAGGAG GCCTGCGGCG 
    TCGAAGTCGT CACCGACGAG GCGCTGCCCC TGATGAAGGC CTGGTTCGAC 
    CGGGTCCTCG CCGTCGACGC CGTGAAGGCG GTCCTGCCGC CGAGGGACAA 
    GCTCGTCGCG CTCAACAAGG CTCGCCGTGA GCAGATCCTC TCGGCGTAGA 
    GAGCACGGTC ACTTCAGCTC CCCAGCTAGT ACGTTTCATC TCCATGGTCC 
    ATGGTTAAAC AATAAGTTCG TCACAAGCAC ATTGTGCAGA AGTAGTAGAT 
    GCTCGAAGCA TGATCCGTCT TAGAGAGACA AACTTAATGC TCTATGATAT 
    GTTATCCAGT GTACAATATT GCCTACTTAA TTATTTCCTC AAGAGGAAAA 
    ATACAGTACA GTTTTGTACT TTTGTAGTGA TCTGATCATT CT

    Gene models with high sequence identity

    1. AT3G09270.1 [+] show detail - glutathione S-transferase TAU 8
      E-value: 1e-53; Score: 206.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Thioredoxin fold 7.7e-19
    Gene3D Glutathione S-transferase, C-terminal-like 1.3e-44
    HMMPanther GLUTATHIONE S-TRANSFERASE 1.8e-108
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 1.8e-108
    HMMPfam Glutathione S-transferase, N-terminal 3.8e-14
    HMMPfam Glutathione S-transferase, C-terminal 4.2e-09
    ProfileScan Glutathione S-transferase, N-terminal 20.534
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 16.998
    superfamily Glutathione S-transferase, C-terminal-like 3e-41
    superfamily Thioredoxin-like fold 2.6e-24

    See the detailed result >

    AT3G09270.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase TAU 8
    Curator Summary
    Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase TAU 8 (GSTU8); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase tau 7 (TAIR:AT2G29420.1); Has 7045 Blast hits to 7029 proteins in 1100 species: Archae - 0; Bacteria - 3564; Metazoa - 831; Fungi - 183; Plants - 2012; Viruses - 0; Other Eukaryotes - 455 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR