K18622

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18622

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18622

Determination of introduced cDNA(s)

  • J023143I16 - Rice Full-length cDNAs - Original: J023143I16

    full reading [+] show sequence

    Nucleotide sequence: J023143I16 - full reading 
    GGGTGGAGGA GCGGAGGCGG AGGCGAACGC GAGGAGGAAG ACGAAGATGA 
    GGAAGAAGCT GGGCACCCGC TTCCCCGCGG CACGGATCAA AAAGATCATG 
    CAGGCTGATG AGGACGTTGG CAAGATTGCA CTAGCTGTAC CTGTTTTAGT 
    ATCGAGGGCC CTTGAATTGT TTTTGCAAGA TTTAATTGAC CGAACTTACG 
    AAATTACACT GCAAAGTGGT GCAAAGACAT TGAATTCCTT CCACCTAAAG 
    CAATGTGTGA GGAGGTACAG TTCTTTTGAC TTCCTAACTG AGGTTGTCAA 
    CAAGGTACCG GACCTCGGTG GCGCTGACTC ATGTGGAGAT GATAGAGCAT 
    TACCCAGAAG AAGAAAAGCC TTGCCAAATG GAAGTGACCC AGAGAATGAG 
    GAATCTCGAT CAAGCAAAAT GGCCGTAAGA AGTGCAAATA TCAGTCCCAG 
    AGGACGTGGG AGAGGTCGAG GTAGAGGGCG AGGACGACCA CCCACCAAGC 
    GGAAGGAAGT TGGTTATGTA CAATTTGAGG ATGAGAGCAG CATGTTTGCT 
    GATCAGGGCG AAGCCTTACC AGGAGAGGAG ACGGTTCCAG AGACCATCCA 
    TGGCACCGAG AGCGTACCTC CAAGCACACA CCCTCCAGCA GAAGCCCCAT 
    CGGCAGCAGA GATACCAGCT CCAAATCCAA AGGTGGAAGA AGCGAAAAAC 
    GACGACCATC AGCCGGATTG GCCTATGCCA GATGCGATTG GGAACATCGG 
    TGTCGGACCA TCCGGTTTTG GACATCTTAC GGTGCAAGTT GACGAGGATG 
    AGGACTACGA CAACGAGGAT TAGCCACGGC CATCTTCTGA TTGTTATGCA 
    CTAACAGGGC AGTTCTCCTG GTGTTGTAAA ATGTAAATAT GTAGCTGCAG 
    CTAGCTGTGA TGTGCTGCTG ATGTAATGCA GTATGTAGTT GTCCCGTGTA 
    ACTTTGTCTG TTTTCCAATA ATTGCTTGCT AGTTGCCTCA CATTGTTGAC 
    ATGATTGACT ACTGAAGTGT TTTGTCAGAA TTAACCCGGT ATTGAAGCC

    Gene models with high sequence identity

    1. AT3G12480.1 [+] show detail - nuclear factor Y, subunit C11
      E-value: 9e-41; Score: 164.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Histone-fold 4.4e-24
    HMMPfam Transcription factor CBF/NF-Y/archaeal histone 5.4e-19
    superfamily Histone-fold 9.4e-21
    HMMPanther NEGATIVE COFACTOR 2 TRANSCRIPTIONAL CO-REPRES 1e-117
    HMMPanther HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELAT 1e-117

    See the detailed result >

    AT3G12480.1

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit C11
    Computational Description
    "nuclear factor Y, subunit C11" (NF-YC11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G19490.1); Has 1099 Blast hits to 1099 proteins in 222 species: Archae - 0; Bacteria - 6; Metazoa - 308; Fungi - 314; Plants - 371; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR