K18531

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18531

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18531

Determination of introduced cDNA(s)

  • J013063L05 - Rice Full-length cDNAs - Original: J013063L05

    full reading [+] show sequence

    Nucleotide sequence: J013063L05 - full reading 
    GTCCGCCTCT CCTCTCTTCC TCCCCACCTC CGTCTCCTCT CTTCCGCACC 
    GGCGAATCCC CAGGCGAGCC TTCTAGAACC TTCGATTGCT CGGGCGGGCC 
    TCCTCCTCCG CGAGCCGCAG CCATGGCGAC CGTCATGCAG AAGATCAAGG 
    ACATCGAGGA CGAGATGGCA AGGACGCAGA AGAACAAGGC CACTGCACAC 
    CATCTTGGTC TTCTGAAGGC TAAACTTGCA AAATTACGCC GTGAGTTGCT 
    GACTCCTACA TCCAAAGGTG GTGGTGGCGG TGCTGGCGAG GGATTTGATG 
    TGACAAAAAG TGGAGATGCA CGTGTTGGTT TGGTGGGCTT TCCTTCAGTT 
    GGAAAATCAA CATTGTTGAA CAAGCTGACA GGAACATTTT CAGAGGTTGC 
    AGCCTACGAA TTCACAACTT TAACATGTAT TCCTGGAGTT ATAATGTACA 
    AAGGGGCTAA AATCCAGCTT TTAGATCTTC CAGGAATCAT TGAGGGTGCT 
    AAAGATGGAA AGGGTAGAGG AAGGCAGGTT ATCAGCACAG CAAGGACATG 
    CAATGTCATT CTGATTGTTC TTGATGCCAT TAAGCCAATA ACCCACAAGC 
    GGCTTATTGA GAAGGAGCTT GAGGGATTTG GCATTAGGTT GAACAAGACA 
    CCCCCCAATT TGACATTTAG AAGAAAGGAC AAGGGTGGCA TCAATTTTAC 
    ATCAACTGTG ACGAACACAA ACTTGGATCT TGAAACAGTA AAAGCAATCT 
    GCAGTGAGTA CAGGATACAC AATGCTGATG TCTCCCTTAG ATATGATGCA 
    ACAGCAGATG ATCTCATAGA TGTGATTGAG GGAAGCAGAA TTTACATGCC 
    TTGCATCTAT GTTGTTAATA AGATTGATCA GATAACACTT GAAGAGCTGG 
    AAATCTTGGA TAAACTTCCC CACTACTGCC CAATTAGTGC TCATCTTGAG 
    TGGAATCTCG ATGGTCTTCT AGAGATGATC TGGGAATACC TGGATTTGGT 
    TAGGATATAC ACAAAACCGA AAGGTTTAAA CCCAGATTAT GAGGACCCTG 
    TAATCGTATC CTCTAAGAAG AAAACAGTGG AAGACTTCTG CAACAGAATC 
    CACAAGGACA TGGTGAAACA ATTTAAATAT GCATTGGTGT GGGGTTCTAG 
    CGTGAAGCAT AAGCCTCAGA GAGTTGGCAA GGAACATGAG CTTGAGGATG 
    AGGACGTTGT CCAGATCATC AAGAAAGTTT AGGTATATTG TAGTGGTCAC 
    GTTCTGCAAA CCTGGAAGGA GGTATGAGCT ATGAGAATTT TGAGAAGCAG 
    TCACTTTTAC TGCGTGTTAT TTTGCTAGCT ATGATGCCCA TAGATGATTG 
    GCTGTTCCCA TGAACGTTTC AATGCAATCA AAATGTAGAC GGACAGATTT 
    TCCTTCTGTC AAGTTAGCCT TGTAATTGTG ATCTTTGTCT GATCTTCCTG 
    TTGCTATATA TATGGTGAGT CACCGATGAA CACAGCAGTT GAACACATGG 
    AAAGATGCTT TGCTTATCTT CAGAAAGATG AAAGATGATT CACATGCT

    Gene models with high sequence identity

    1. AT4G39520.1 [+] show detail - GTP-binding protein-related
      E-value: 2e-173; Score: 606.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan GTP1/OBG 3.7e-31
    FPrintScan GTP1/OBG 3.7e-31
    FPrintScan GTP1/OBG 3.7e-31
    FPrintScan GTP1/OBG 3.7e-31
    superfamily P-loop containing nucleoside triphosphate hyd 1e-52
    HMMPanther DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 1.1e-108
    HMMPanther DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 1.1e-108
    PatternScan GTP1/OBG, conserved site 0
    Gene3D no description 2.2e-43
    HMMPfam TGS 3.5e-25
    HMMPfam GTP-binding protein, HSR1-related 2.9e-20
    Coil coiled-coil 0
    HMMTigr Small GTP-binding protein 2.2e-26

    See the detailed result >

    AT4G39520.1

    Model type
    Protein coding
    Short Description
    GTP-binding protein-related
    Curator Summary
    Encodes a member of the DRG (developmentally regulated G-protein) family. Has GTPase activity.
    Computational Description
    GTP-binding protein-related; FUNCTIONS IN: GDP binding, GTP binding, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated G-protein 1 (TAIR:AT1G17470.2); Has 19252 Blast hits to 19228 proteins in 2957 species: Archae - 773; Bacteria - 12312; Metazoa - 831; Fungi - 661; Plants - 370; Viruses - 0; Other Eukaryotes - 4305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR