K18222

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18222

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18222

Determination of introduced cDNA(s)

  • J023109D15 - Rice Full-length cDNAs - Original: J023109D15

    full reading [+] show sequence

    Nucleotide sequence: J023109D15 - full reading 
    GGGGGGCCGT TGAAGAGAGG AAAACCTAGG CTAGTTGGCG AGCTCGCCCC 
    ACTCCGTCGG CGGCCGCGCC TTCCCTGTGC TGGAATCCAG CGGCCGCCGG 
    AGACGGCGAG TTCGACGCCG CGGCTGCGCG CGGAGACGTT AACCCTGCGG 
    CGGCTCCTAC CTAGGAGGTG TTCTTACTGG TTGTTATAGC GATTCTCTGT 
    TTGGTGCCCA TGAGCAAGAA GAAGAACAAG TCTCAATTGC CAATAAAGGC 
    GCCGTTGAAA GATGCTGAAC AAGGAATAAC TTCGGATTAC ATTGGAGGAG 
    ACGCTCTTGA TGACCTATTA TCGAAGCTTA TTAAGAGCGT GGAGGTTGCA 
    AAGGCTTCAA GGGAAGGGTT GCCGGAAAAG ATATGGATGA AGCGACAATT 
    TGCCGTTGGG GTCAATGATG TCACAAGGGT TCTTGAGCGA ATGCCTGCTG 
    CTACTGCTGC CACCCATTCT GGTCACTCTT CTACTGAAGC AATAACTGAC 
    AAAGCTCTGT GTAGAGCTCC TCCGGTGCTT CTTCAGGTTG TCCTTGTAGC 
    TGCTGATTGC AACCCTAAAT GGTTAACAAA ACACATACCA ACCCTGGCAT 
    CTACAAGGCA GGTTCCTGTG TTGTGCCTCA AGGACAACAA AGAAAGCTCA 
    CTGAGGTTAG GTCAAGTGGT GAATGTCAGA ACAGCACTGG CCATTGGAGT 
    AAAGGCCAGA GATAGCATAA TCAATAAGGC TATTGATGAA GTCCTGAAGA 
    CTGCTAATCT GGTTGCCAAG GAACCGTAAC TGAGCTTCTG GTCCAATCTC 
    AGTGACATAA TGGGCGAATT TATTTTTAAA CAAGGCAGAA GCTCTGCCTC 
    ATTCCACTAA TAAAGAATAG ATATTGACCC AAGAAAATGT TTGCACCAAA 
    AACTGATAGG TGAATTTTGG ACCTCTGGGT GCTCAGCATT GCAGTAGCAT 
    CTTGACAGGA AGTCATGAGG ATGAATGGGC ATGCAGTTGA GAATTTCGCG 
    AAGGAAATCA AGGATGCTGC TGAACTGTGG CGTTTACATC TGAAGAACTT 
    TTTCTGCCTG TATTCATGAA GATCAGGCCA GACCAGGCTT GTTTGTTAGG 
    TAGGTTCATT CTGTTTAGTT GAATTTGTGG ATCATAGAGC TAGCAAAGTT 
    GCTCGCCTAG ACTGTAGGCT ATATTATGAG CAATTTAGTG CGTATGTGTC 
    CACTATGTAT AATGCCATTT GCAGCCTTGT GGATATCTGC CTTATGTTGT 
    TTGTGTTCAA CCTTAATTTG GACGATATAA ATCATTATCA TAACAAACAT 
    CCTTAATACA TAAACCAGGA TAGATGTACT AACGTTATT

    Gene models with high sequence identity

    1. AT4G01790.1 [+] show detail - Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
      E-value: 3e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 1.6e-05
    superfamily L30e-like 3.9e-10
    Gene3D no description 0.00055

    See the detailed result >

    AT4G01790.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    Computational Description
    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); Has 95 Blast hits to 95 proteins in 35 species: Archae - 3; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR