K18212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18212

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18212

Determination of introduced cDNA(s)

  • J033046F10 - Rice Full-length cDNAs - Original: J033046F10

    full reading [+] show sequence

    Nucleotide sequence: J033046F10 - full reading
    GATCCAGAAT CAGATCCACA AGGCAGCAGC TGCAGCAGCA TCGACCATGG 
    CGATGGCGCG ATCCATCCTC CTCCTCCTCC TCCTCGCCGC CGCCGCCTCC
    GCCTCCGCCG ACGCGCCCTT CCTCGTCGCG CACAAGAAGG TTTCGCTCTC
    CCGCCCCAAG CCTGGCGTCG AGCGCCTCGC CGTCTCCCTC GACCTCTACA
    ACCAGGGATC CGCAACTGCC TATGATGTGA GCATTAATGA TGATACTTGG
    CCAAAGGAGG CATTTGAGCT TGTCTCTGGA GAGATGTCAA AGACATTGGA
    AAGGCTTGAC CCTGGTGTCA CTGCTTCGCA TGCATTTGTC TTGGAGACCA
    AAGTACAGGG CATGTTTCAG GTTCACCTGC GGTTATTACC TATCGTGTTC
    CCACAAAGGC TGCGCTTCAG GAGGCCTATT CAACCCCCAT CCTTGCACTT
    GATGTTCTTG CTGAGAGGCC TCCAGAAAAG AAGTTTGAAT GGGCTAAGAG
    GCTTGTGGCG AAGTACGGGT CGCTGGTGTC CGTTGTTGGC TTGGTTGGAG
    TGTTTATCTA CCTGGTTGCA AGCCCGTCAA AATCCAGCGG TGCAAAAGCA
    AGCAAGAAGA GGCGTTGATA TACTTGCCTA CCATATATAA GGCAGTGTTT
    GTTCTTTTTT ATTAAAAAGA GGAAGAGATG GTGGCAGGTT TTTTAGATTG
    ATAGCGCGAG AGCTTTAAGG CTGCCGCATC CTTGAACTGT ATGAATTTTC
    TCTGTTTGTG TTTTTGGAAG TTGAAAACCT AACCCAGAGA ATTGGAGAGT
    AGATTTTGTA ACAGATGAAA TCTCAATGCA TCATTTTGAA GTTGCCTGAT
    ACAGATACCT ATTCATTGCA TTTGGTAACA GATGAAATCC C

    Gene models with high sequence identity

    1. AT5G14030.4 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 2e-20; Score: 96.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Translocon-associated beta 1.9e-15
    HMMPfam Translocon-associated beta 1.5e-34
    HMMPanther Translocon-associated beta 1.5e-21

    See the detailed result >

    AT5G14030.4

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR