K18043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18043

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18043

Determination of introduced cDNA(s)

  • J013134P03 - Rice Full-length cDNAs - Original: J013134P03

    full reading [+] show sequence

    Nucleotide sequence: J013134P03 - full reading 
    GCTCCATCCT CTGCTGCACT GGCACGAACG TCGCCGGGAT CCCGACCCGG 
    TTCGTCCCTC CCAAGCCCCA ACCCGAGGAG CAAAGCCGGG GCATGGCAGA 
    ACCGTGAATA AGCCGCAACC TCTGTGGCGG TTTCCGACCA ATCCCCTTCT 
    TCTCCACCCA ACCAGGTGAG AAATGCGATT GGGCGATGGC TTCGCTTTCC 
    TCGCGCTATA AATTCCGCGG GCAACAATAA AGAATTGGAG CGGAGCAGCA 
    AGTGGTGGGA GGGAGAATCC GGAATCCCAA AGCAACAGCA GCTAGGGTGA 
    AGGGAGGGAG GGAGGGGGAG AGGGAGAACC GCGGCGATGT CGTCGTGGAA 
    CTCGGTGGGG ATGGAGGTGC TGTACCAGGT GCTCGGGTGG GTCGCCTTCT 
    TCGCTTGGTC CTTCAGCTTC TACCCGCAGG TCTTCCTCAA CTTCAAGCGC 
    AAGAGTGTGG TGGGTCTGAA CTTTGATTTT CTGGTGTTGA ACTTGACAAA 
    GCACTCATCC TACCTCATAT ACAATGCTGC TCTATTCTTC AGCCCCTTCA 
    TCCAGAGACA GTATCATGAG ACATATGGTG ATAAAGAGAT GATTCCTGTC 
    GCGGCAAATG ATGTTGCCTT TTCTGTACAC GCGGTTGCCT TGACAGCTTT 
    TACCCTTTTT CAAGTATTCA TCTACGAGCG AGGAAACCAG AAAATCTCCA 
    AAGTCTGCAT ATCAATCACT GCTATTGTGT GGACAGCTGC TATTGTTTGC 
    CTTATTGTAG CTTGGCCAAA AAGTAACTGG CTCTGGCTTA TAGATGTGTT 
    CAATTCAATA CAGGTTGGGA TGACAGCAAT CAAATACATT CCTCAGGCCA 
    TCATGAACTT CAGGAGGAAG AGTACAATTG GTTGGAGTAT TGGCAATATT 
    TTACTTGATC TTACAGGAGG GGTGCTAAAC TTTGGCCAGA TGGGTGTGCA 
    ATCAATAGAT CAACACACGC TAGTGAACTT CTATGGAAAT ATTGGGAAAA 
    CCCTTCTTTC ATTGGAAGTC GTTTTCTTCG ACATCTTATT CATAATCCAA 
    CACTATGTGC TGTACCCTGT CAAACGAGAT GAGAATGGTA AGGCTATCAT 
    TTCTGAAAGG GTAGCTCCTC TTATCAGGCC TTCAGACAAG CCTGAAGAAG 
    ATAGTGTGTG ATATACCTAT TGTATTTCAC CTTTTTTATG GCCCTGATTA 
    CATTCGCTTC AGGGTATAGT CCCAACTATC CATTCATATG AAACAAATGC 
    ATTTTTCGTA AAACTAAATT TTGTACATAT TTGTTTACGG ATTAATGTAA 
    AGATGTAGAT ACAATAGGCC TTTGATACTA GTCTTAAAAC AATGTTTGTG 
    ATTATGTAAG TGTAAGTATA CTT

    Gene models with high sequence identity

    1. AT5G40670.1 [+] show detail - PQ-loop repeat family protein / transmembrane family protein
      E-value: 2e-103; Score: 372.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYSTINOSIN 5.2e-92
    HMMSmart Cystinosin/ERS1p repeat 7.5e-05
    HMMSmart Cystinosin/ERS1p repeat 1.9e-10
    HMMTigr Lysosomal cystine transporter 1.1e-57
    HMMPfam PQ-loop 1.8e-17
    HMMPfam PQ-loop 3.9e-16

    See the detailed result >

    AT5G40670.1

    Model type
    Protein coding
    Short Description
    PQ-loop repeat family protein / transmembrane family protein
    Computational Description
    PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR