K17741

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17741

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17741

Determination of introduced cDNA(s)

  • J013153D03 - Rice Full-length cDNAs - Original: J013153D03

    full reading [+] show sequence

    Nucleotide sequence: J013153D03 - full reading 
    GGGATAGACA CCTCCTGAAC TCCACCGGGA GAGAGACCGG ATCGACCTCG 
    CGCTTTCTCC GTCCAATCGA CCATGCCGAC GGCGTCGCCA GCCCACGCGG 
    TGTTCTTCCC GTACCCGGTG CAGGGCCACG TCGCGTCGGC GCTGCACCTG 
    GCCAAGCTCC TCCACGCCAG GGGCGGCGTC CGCGTCACCT TCGTCCACTC 
    CGAGCGCAAC CGCCGCCGCG TGATCCGCTC CCACGGCGAG GGCGCGCTCG 
    CCGCCGGCGC CCCGGGGTTC TGCTTCGCCG CCGTCCCCGA CGGCCTGCCG 
    TCGGATGACG ACGACGACGG CCCGTCCGAC CCCCGCGATC TGCTCTTCTC 
    CATCGGGGCC TGCGTCCCGC ACTTGAAGAA GATCCTCGAC GAGGCCGCCG 
    CCTCGGGGGC ACCGGCCACC TGCGTCGTCT CCGACGTCGA CCACGTCCTG 
    CTCGCTGCCA GGGAGATGGG CCTCCCGGCC GTCGCGTTCT GGACGACGTC 
    CGCTTGCGGG CTCATGGCGT TCCTCCAATG CAAGGAACTC ATCGACAGAG 
    GCATCATTCC ACTCAAAGAC GCTGAGAAGC TGAGCAATGG CTACCTCGAC 
    AGCACGGTGG TCGACTGGGT GCCGGGGATG CCGGCGGACA TGCGCCTGCG 
    CGACTTCTTC TCCTTCGTCC GAACCACGGA CACCGACGAC CCCGTGCTGG 
    CCTTCGTCGT GTCCACCATG GAGTGCCTGC GCACCGCCAC GTCCGCCGTC 
    ATCCTCAACA CGTTCGACGC GCTGGAGGGC GAGGTCGTCG CCGCCATGTC 
    GCGCATCCTG CCGCCCATCT ACACGGTCGG CCCGCTCCCT CAGCTCACCG 
    CCGCATCACA CGTCGTCGCT TCCGGCGCCG ACCCGCCAGA CACGCCGGCC 
    CTGAGCGCCG CCAGCCTCTG CCCGGAGGAC GGTGGGTGCC TCGAGTGGCT 
    CGGCCGCAAG CGCCCGTGCT CCGTCCTGTA CGTCAACTTC GGCAGCATCG 
    TGTACTTGAC GAGCACACAG CTCGTGGAGC TAGCATGGGG GCTGGCCGAC 
    AGCGGCCACG ACTTCCTGTG GGTGATCAGA GACGACCAAG CTAAGGTCAC 
    CGGCGGCGAC GGCCCCACCG GCGTGCTACC AGCCGAGTTC GTGGAGAAGA 
    CGAAGGGGAA GGGTTACTTG ACGAGCTGGT GCCCGCAGGA GGCGGTGCTC 
    CGGCACGACG CCATCGGCGC GTTCCTGACG CACTGCGGGT GGAACTCGGT 
    ACTCGAGGGC ATCTCCAATG GCGTACCCAT GCTGTGCTAC CCGATGGCCG 
    CCGATCAGCA GACAAACTGC CGGTACGCTT GCACGGAGTG GCGCGTCGGT 
    GTGGAGGTCG GCGACGACAT CGAGAGGGAA GAGGTGGCGA GGATGGTGAG 
    GGAGGTGATG GAAGAGGAGA TCAAAGGCAA GGAGGTGAGG CAGCGTGCCA 
    CGGAATGGAA GGAAAGGGCA GCCATGGCTG TGGTGCCTAG TGGAACCTCA 
    TGGGTCAACT TAGATAGGAT GGTTAATGAG GTCTTTTCTC CCGGTAACAA 
    TATGTAAAAT GTCGAGATTT GCTGTTGTTT CTAAATGCTT TCCATGTCAT 
    ATAAATTTAA ATAAGGACGA TATGTGTAGG GGGCACATAA TATGCGCTCA 
    GTCGTGCGGG GGCACGCCCC ACGCGGTTTC CTCCTCTAGT CTCTTATGTA 
    TATATTTATA TATGTATGTA TACGTTTTTT TT

    Gene models with high sequence identity

    1. AT1G22380.1 [+] show detail - UDP-glucosyl transferase 85A3
      E-value: 1e-96; Score: 351.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.7e-50
    HMMPanther UDP-GLUCOSYLTRANSFERASE 1.6e-112
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 1.6e-112
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 5.5e-28
    Gene3D no description 3.8e-14

    See the detailed result >

    AT1G22380.1

    Model type
    Protein coding
    Short Description
    UDP-glucosyl transferase 85A3
    Curator Summary
    Encodes a putative UDP-glucosyl transferase. At1g22380 was initially identified as encoding the protein AAF87154, which has been classified as a bHLH protein (AtbHLH152). Subsequently it has been found that the AAF87154 protein appears to be encoded by the AT1G23970 genomic locus.
    Computational Description
    UDP-glucosyl transferase 85A3 (UGT85A3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G22400.1); Has 7656 Blast hits to 7558 proteins in 363 species: Archae - 0; Bacteria - 87; Metazoa - 2193; Fungi - 26; Plants - 5186; Viruses - 99; Other Eukaryotes - 65 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR