K16241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16241

Determination of introduced cDNA(s)

  • J033128K05 - Rice Full-length cDNAs - Original: J033128K05

    full reading [+] show sequence

    Nucleotide sequence: J033128K05 - full reading 
    GAGTGCTCGG CACGTCGGTT GTTGCTGTTG CTGCTGCTGC TCCTCCCGTT 
    TTCCGATCGC AGCCATGGGA ACCCGCAGCG TGGCCTTGGT GCTCCTCGCG 
    GCCGTGCTGC TCCAAGCCCT CCTCCCCGCT TCGGCGGCGG AGGGTTTGGT 
    GCGGATCGCG CTGAAGAAGC GCCCGATCGA CGAGAACAGC CGCGTCGCCG 
    CGCGACTCTC CGGCGAGGAA GGGGCGCGCC GGCTGGGCCT CCGCGGCGCC 
    AACTCCCTTG GCGGCGGCGG GGGTGAGGGC GACATCGTGG CGCTGAAGAA 
    CTACATGAAC GCGCAGTACT TCGGGGAGAT TGGCGTCGGC ACTCCGCCGC 
    AGAAATTCAC CGTCATCTTC GACACTGGCA GCTCCAACCT CTGGGTGCCG 
    TCGGCCAAGT GCTACTTCTC GATTGCGTGC TTCTTCCACT CTCGCTACAA 
    GTCCGGACAG TCGAGCACTT ATCAGAAGAA TGGAAAACCA GCTGCCATTC 
    AGTATGGCAC TGGTTCAATT GCTGGGTTTT TCAGCGAGGA TAGTGTTACA 
    GTAGGTGATC TGGTTGTGAA AGATCAGGAA TTCATTGAAG CTACCAAGGA 
    GCCAGGTCTT ACTTTCATGG TTGCAAAATT TGATGGCATT CTTGGGCTTG 
    GATTTCAGGA AATATCCGTT GGAGATGCAG TACCTGTGTG GTATAAGATG 
    GTAGAGCAAG GTCTTGTCAG TGAGCCTGTT TTCTCCTTCT GGTTCAACCG 
    TCATTCTGAT GAAGGAGAAG GTGGTGAAAT TGTGTTTGGA GGAATGGATC 
    CTAGCCACTA CAAGGGCAAC CATACATATG TTCCAGTCTC TCAGAAGGGA 
    TATTGGCAGT TTGAGATGGG CGATGTCCTG ATTGGAGGAA AGACCACAGG 
    ATTTTGTGCT AGCGGTTGTT CAGCTATAGC AGACTCTGGA ACATCATTGC 
    TTGCTGGCCC CACAGCCATA ATCACTGAAA TCAATGAGAA GATCGGTGCT 
    ACTGGGGTAG TCAGCCAAGA ATGCAAGACA GTTGTTTCTC AATATGGACA 
    ACAGATCCTA GATCTGTTGC TTGCTGAGAC ACAGCCATCA AAAATCTGCT 
    CTCAGGTTGG TCTGTGTACT TTTGATGGGA AGCATGGTGT TAGTGCTGGA 
    ATTAAGAGCG TAGTAGATGA TGAAGCTGGG GAATCGAATG GTCTCCAAAG 
    TGGTCCCATG TGCAATGCCT GTGAGATGGC TGTTGTATGG ATGCAGAACC 
    AACTTGCACA GAACAAGACT CAGGATCTCA TCTTGAACTA CATTAATCAG 
    CTCTGTGACA AGCTCCCAAG TCCAATGGGA GAATCATCTG TGGACTGTGG 
    CAGCCTTGCA TCCATGCCTG AGATTTCATT CACCATTGGA GGCAAAAAGT 
    TTGCACTGAA GCCAGAAGAG TATATTCTGA AGGTTGGTGA AGGAGCTGCT 
    GCCCAGTGCA TCAGTGGATT CACAGCCATG GACATCCCTC CTCCCCGTGG 
    TCCTCTCTGG ATCCTGGGTG ACGTTTTCAT GGGTGCCTAC CATACCGTGT 
    TCGACTACGG CAAGATGAGG GTTGGCTTCG CGAAGTCGGC CTAAACGTGT 
    TGTTGTCACG TTCCTAATGA CGAGGTGGAC GCATACGCCG AGAGAAGAAG 
    ACCGTAGCTT TTAACTAGCG TATTTATCCG GCGATGTGTG TATATATGCA 
    TGCTACATAA CATGTTTATG TTTTCCAAGG CCTGAGATGG CGCCCGTCTA 
    TTTTAGCTTG GCAAGAATAT CTCGGACCAG TCTCTGTTCG AATTCTCGTA 
    CTGATATGTG AACTTCTG

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 709.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase A1 2.9e-29
    FPrintScan Peptidase A1 2.9e-29
    FPrintScan Peptidase A1 2.9e-29
    FPrintScan Peptidase A1 2.9e-29
    HMMPanther ASPARTIC PROTEINASE-RELATED 2.8e-251
    HMMPanther Peptidase A1 2.8e-251
    superfamily Peptidase aspartic 7.1e-127
    superfamily Saposin-like 4.3e-29
    PatternScan Peptidase aspartic, active site 0
    PatternScan Peptidase aspartic, active site 0
    Gene3D Peptidase aspartic, catalytic 6e-86
    Gene3D Peptidase aspartic, catalytic 1.1e-20
    HMMSmart Saposin B 0.0063
    ProfileScan Saposin B 13.464
    ProfileScan Saposin B 12.419
    HMMPfam Peptidase A1 5.1e-131
    HMMPfam Saposin-like type B, 1 4.2e-15
    HMMPfam Saposin-like type B, 2 4e-14

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR