K16147

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16147

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16147

Determination of introduced cDNA(s)

  • J033035B15 - Rice Full-length cDNAs - Original: J033035B15

    full reading [+] show sequence

    Nucleotide sequence: J033035B15 - full reading 
    GGAGGAAGAG GAGGACGGAC GCTGCATGTC ACCGTGCCAG GCCATGTGCC 
    GCGGCCCAAC ATGGCACGTT CTCCCCTCCA GTTCACTTCT CTCTCTGCTC 
    ACACACACTA GCCTAGCCAG TGTACTAGTG TTGTAGTGTA CCCACCTCGC 
    TTATAAATAC CCGGTTCCGC ACTACGGCCA CACAAACCAA CACCCCCACT 
    CATCTCACTT CACTCTCTTT CTCTTCTCTT CACTTCACCA CCGCCACCTC 
    TCTCATCGGA TCCCTGCAGA GGAGGAGAGG GCAGTGGCGG CGAAAGGCGA 
    CATGGGCTCG CTGTCCTCTC TCGCCGCCGC GGCGGTGTTT CTCTCCCTCC 
    TCGCCGTCGG CCACTGCGCC GCCGCCGACT TCAACGCCAC CGACGCCGAC 
    GCCGACTTCG CCGGCAACGG CGTGGACTTC AACTCCAGCG ACGCCGCCGT 
    CTACTGGGGC CCCTGGACCA AGGCCAGGGC CACCTGGTAC GGCCAGCCCA 
    ACGGCGCCGG CCCCGACGAC AACGGCGGCG CGTGCGGGTT CAAGCACACC 
    AACCAGTACC CGTTCATGTC GATGACCTCC TGCGGCAACC AGCCATTGTT 
    CAAGGACGGC AAGGGATGCG GCTCTTGCTA CAAGATCAGA TGCACCAAGG 
    ACCAGTCGTG CTCCGGCAGG TCGGAGACGG TGATCATCAC CGACATGAAC 
    TACTACCCGG TGGCTCCGTT CCACTTCGAC CTCAGCGGCA CGGCGTTCGG 
    CAGGCTCGCC AAGCCTGGCC TCAACGACAA GCTGCGCCAC TCCGGCATCA 
    TCGACATCGA GTTCACCAGG GTGCCATGCG AGTTCCCGGG GCTCAAGATC 
    GGGTTCCACG TGGAGGAGTA CTCGAACCCT GTGTACTTCG CGGTGCTGGT 
    GGAGTACGAG GACGGCGACG GCGACGTGGT GCAGGTGGAC CTGATGGAGT 
    CGAAGACGGC GCACGGGCCG CCGACGGGGA GGTGGACGCC GATGAGGGAG 
    TCGTGGGGCT CCATCTGGAG GCTGGACACC AACCACAGGC TCCAGGCCCC 
    CTTCTCCATC CGCATCCGCA ACGAGTCCGG CAAGACGCTC GTCGCCAACA 
    ACGTCATCCC GGCCAACTGG AGGCCCAACA CATTCTACCG CTCCTTCGTC 
    CAGTACAGCT GAACCGCCGC TCGCCGGCGG CGACCCTCGG CGCCGGCATC 
    GCCGCCGCTG CTGCTGCTAG TAATACTACT ACTGCTATGA TGTAATTGTG 
    TTACCGGTTG GGTTCTTTGA GTTTGTTGGG GTTGGGGATT GTGTGGTCGG 
    TCTGTGTTGC GATTTGCAGA AACCGGGCGA GCGAAAGAAG AAAAAAAAAG 
    CTGTGTGGGA AATGGAGGAG GTAGGCGTAC AAGGTTACGC TCTCCCGCCC 
    ACTCTCGCTT TTATAATTTA TCATTTTCAA ATGGTGATGA TAAGATGATT 
    AATCAAAAGG ATTATATTGC TACCT

    Gene models with high sequence identity

    1. AT1G65680.1 [+] show detail - expansin B2
      E-value: 4e-54; Score: 209.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart no description 4.6e-05
    Gene3D Pollen allergen, N-terminal 9.6e-47
    Gene3D Pollen allergen/expansin, C-terminal 2.4e-31
    superfamily Barwin-related endoglucanase 7.5e-45
    superfamily Pollen allergen/expansin, C-terminal 1.5e-31
    HMMPfam Pollen allergen/expansin, C-terminal 2.8e-30
    HMMPfam Rare lipoprotein A 7.1e-20
    ProfileScan Expansin 45, endoglucanase-like 26.946
    ProfileScan Pollen allergen/expansin, C-terminal 25.612
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Major pollen allergen Lol pI 5.8e-49
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27
    FPrintScan Expansin/Lol pI 1.4e-27

    See the detailed result >

    AT1G65680.1

    Model type
    Protein coding
    Short Description
    expansin B2
    Curator Summary
    member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin B2 (EXPB2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 2190 Blast hits to 2184 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 26; Plants - 2110; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR