K15934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15934

Determination of introduced cDNA(s)

  • J013031J21 - Rice Full-length cDNAs - Original: J013031J21

    full reading [+] show sequence

    Nucleotide sequence: J013031J21 - full reading 
    GAAGTAGCTC CGTGTTGTAG TGTTGTGTAG CAGTAGTCCA CCGCTGAGAA 
    GCTAGCAAAG CCAGCCATCC ATTCAGCGCA GTACTCTCGG GAGAGCTAGA 
    AGCGATCTAT TCTAGCCACA AGGAGGAGAG ATAAACGTAT CGAAATGGAG 
    CACATCGCGA GGTTCTTCTT TGGAGTTTCC GGCAATGTCA TCGCTCTCTT 
    CCTGTTCCTT TCGCCAGTTG TCACCTTCTG GAGGATCATC AAGAAGAGAT 
    CAACGGAGGA CTTCTCCGGC GTGCCTTACA ACATGACACT TCTCAACTGC 
    CTGCTATCTG CTTGGTACGG GCTGCCGTTC GTGTCACCGA ACAACATCCT 
    GGTGACGACG ATCAACGGGA CGGGGTCGGT GATCGAGGCC ATCTACGTGG 
    TGATGTTCCT CATCTTCGCG GAGAGGAAGG CCAGGCTGAA GATGATGGGT 
    CTCCTGGGCC TCGTCACCTC CATCTTCACC ATGGTGGTGC TCGTCTCCCT 
    CCTGGCCCTG CACGGCCAGG GCCGCAAGCT CTTCTGCGGC CTCGCCGCCA 
    CCATCTTCTC CATCTGCATG TACGCCTCGC CTCTCTCCAT CATGAGGCTG 
    GTGATCAAGA CGAAGAGCGT GGAGTTCATG CCGTTCCTGC TCTCCCTGTC 
    CGTGTTCCTG TGCGGCACCT CCTGGTTCAT CTACGGCCTG CTCGGCCGCG 
    ACCCTTTCAT CGCGATCCCC AATGGATGCG GGAGCTTTCT GGGCTTGATG 
    CAGCTGATCC TCTACGCGAT CTACCGGAAC CACAAGGGGG CCACGCCGGC 
    GGCGGCGGCC GGGAAGGGGG ACGCCGCCGA CGAGGTGGAG GACGCGAAGA 
    AGGCGGCCGC CGCGGTGGAG ATGGCCGACG CCAAGACCAA CAAGGTCGTC 
    GCCGACGACG CCGACGCCGA CGCCGATGGC AAGTCGGCGG ACGACAAGGT 
    CGCCAGCCAG GTGTGACGCG TTCGGGGCCC CGCACGGCGC CCGGCCGACA 
    CGCACGGAAG AATGCAGCTT AAAGCATTGT TGCTGCTGCT GGATTGATTA 
    GTGGTTAAGC AGATTATTGC TGTCGCCTTT CTTGATTTTT CTTTTTACTG 
    ATCTCTGTCT CTCGTGCCCG ATCGAGAGAG TATGATACTG TATTTCCCGT 
    TCTGTTCTTG C

    Gene models with high sequence identity

    1. AT1G21460.1 [+] show detail - Nodulin MtN3 family protein
      E-value: 6e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam MtN3/saliva-related transmembrane protein, conserved region 3.6e-20
    HMMPfam MtN3/saliva-related transmembrane protein, conserved region 6.2e-29
    HMMPanther RAG1-activating protein 1 homologue 5.5e-90
    HMMPanther RAG1-activating protein-1-related 5.5e-90

    See the detailed result >

    AT1G21460.1

    Model type
    Protein coding
    Short Description
    Nodulin MtN3 family protein
    Computational Description
    Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G53190.1); Has 988 Blast hits to 930 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR