K13947

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13947

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13947

Determination of introduced cDNA(s)

  • J023104P18 - Rice Full-length cDNAs - Original: J023104P18

    full reading [+] show sequence

    Nucleotide sequence: J023104P18 - full reading 
    CCTCACTTCG CTCTCTCCTC TCCTCCGCAT CGCGATCACC TCCTCCTCTC 
    CTCTCCTCGC CTCGCCTCGC CGGAGATCGC CTCACCCACG CGCCGCCTCC 
    CTCCCATGGA CGCATCCTAC CGCCGCGACG GCCGCGGAGG CGGCGGCGGC 
    GGGGGCGGCG GCGGTTCCGC CCCTCGCTCC GTCGAGGACA TCTTCAAGGA 
    CTTCCGCGCC CGCCGCACCG CCATCCTCCG CGCCCTCACC CACGACGTCG 
    AGGATTTCTA CGCGCAGTGC GATCCAGAGA AGGAGAATCT GTGCCTGTAC 
    GGGTACGCGA ACGAGGCGTG GCAGGTGGCG CTGCCGGCGG AGGAGGTGCC 
    CACCGAGCTG CCGGAGCCGG CGCTCGGGAT CAACTTCGCC CGCGACGGGA 
    TGAACCGCCG CGACTGGCTC GCGCTCGTCG CCGTCCACTC CGACTCGTGG 
    CTCGTCTCCG TCGCCTTCTA CTACGCCGCG CGCCTCAACC GCAACGACCG 
    GAAGCGTTTG TTTGGCATGA TGAATGATTT GCCAACTGTT TACGAAGTCG 
    TATCTGGTTC AAGACAATCT AAGGAGAGGG ACAGATCCGG CATGGACAAC 
    AGCAGCAGAA ATAAAATTTC ATCGAAGCAT ACCAGCGACG TGGCGCGTGT 
    CGAAAATAAT ATCAAGGAGG AAGATGAAGG CTACGACGAG GACGATGGCG 
    ACCACAGTGA GACCCTATGC GGGACTTGCG GTGGGATATA CAGCGCCGAC 
    GAGTTCTGGA TCGGCTGCGA CGTGTGCGAG AGGTGGTACC ACGGCAAGTG 
    CGTCAAGATC ACTCCGGCGA AGGCGGAGAG CATAAAGCAG TACAAGTGCC 
    CGAGCTGCAG CTCCAAGAGA CCTAGACAGT AGTAGCATAT GCCACCCTCC 
    TCCGGCGAGA GGAGGTGTCG CCGGCGACGC CGCCATTGAC AGAGGCGTCA 
    GGCTGTGGGT TACTGTACCT TTCGTTTTTC GACTTACATA TGATGAAGAT 
    GATGCCAAAT GTGAGGTAAG AAGATCACAA GACATTCATG TGAGGTGGAG 
    ATATGAGGCT ATGTATGTTG CCAGAGGAAT AGGGGTAACG TAATATATGT 
    AACTTTGCG

    Gene models with high sequence identity

    1. AT3G11200.1 [+] show detail - alfin-like 2
      E-value: 1e-82; Score: 303.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Zinc finger, FYVE/PHD-type 5.2e-12
    Gene3D no description 1e-15
    PatternScan Zinc finger, PHD-type, conserved site 0
    HMMSmart Zinc finger, PHD-type 5.3e-10
    ProfileScan Zinc finger, PHD-finger 9.348
    HMMPfam Protein of unknown function DUF3594 2.2e-77
    HMMPfam Zinc finger, PHD-finger 8.2e-11
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 1.4e-10

    See the detailed result >

    AT3G11200.1

    Model type
    Protein coding
    Short Description
    alfin-like 2
    Curator Summary
    AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR