K13202

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13202

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13202

Determination of introduced cDNA(s)

  • J013089I06 - Rice Full-length cDNAs - Original: J013089I06

    full reading [+] show sequence

    Nucleotide sequence: J013089I06 - full reading
    GTCGGTTGGT TGGCTGGTTG GTCGGCGAAT TGCACATCTT GGGGCGACCG 
    ATCGGCGGCC GGCGGGCGAA GCAACCAAGG CCCAAAAGGG AGGGAAAAAA
    CCTTGGTTGT GTGTGTGCCG CCGCGAGCCC GTGACGGCGC CCTCCGGCAC
    GCGATAGGGA GGATGCCGTA CTGCGTGGTC AGCCACGGCG ACCCATCGGC
    GGCGGCGGCG GCGGCCGGCG AGGAGGGAGA TGTGCGGATT TTCTACCAGA
    GATACGGCCA TGGCGGCACC AAGGTGCTCC TCATCATCGG GTTCGCGGGG
    ACGCACGAGT CGTGGGGCCC GCAGGTGAAG GGCCTGACGG GCGCCGTCGA
    GCCCGTCGAC GAGGAGGGCG CCGAGGTCTG CTGCTTCGAC AACCGCGGCA
    TTGGCCGGAG CTCCGTGCCG CCGCACAAAT CGCAGTACAC GTAATGCTCT
    GCTCTTTACC ACCCATTGAA TTCTCTGACA GAGACAGAGA TACTAGTCGA
    GTTCTTTCTA ATCTTCTCCC AACATCAAAT ATCCAAATAA AATCATTTCA
    TCTGCTCGAT TCTTCGCAGC ACGGTGATCA TGGCGAAGGA CGCGCTAGCA
    TTAATGGCTC ATCTAGGGTG GCGGAAAGCA CACGTTTTCG GTCACTCCAT
    GGGGTCCATG ATAGCTTCCA AGTTGGCCGC CATTGCGCCG GAGCGTGTCG
    CTTCGCTGGC GTTGCTCAAC ACCACCGGAG GTGGCTACCA ATGTATCCCC
    AAGATTGATT GGCAGACCAT ATCCCTCGCA TGTCGTTTTC TAAGAGCAAG
    AACTCCAGAG CAGAGAGCTG GTGTTGATCT TGATGTTCAT TACACGAGGG
    AGTACCTCGA TGAAATTGTT GGATCAAATA CCAGAAGACA AATGCTTTAC
    CAGGAATATG TGAAAGGTTT GTCATCATGT GGAATGCAAT CAAGACATGG
    ATATGAAGGA CAACTGAATG CATGTTGGAC GCATAAGCTT ACACAGAAAG
    AACTAGACCG GATTCGTTCA TCAGGTTTTC TTATTCTAGT TATACACGGA
    AGGGATGATG TTGTAGCTCA GTTGTATCAT GCAAGGAGAC TAGCAGAGAA
    GCTCCAGCCT GCTGCTAAAC TGGTTGAACT CCATGGAGGC CACCTGGTGA
    GCCACGAAAG AACAGCTGAG GTTAATATGT CCCTCATGGA GATGATAAAA
    GCATCAAAAT CAAATACAGA TCAGGGGGAA TGGTCAAACC TTCCTAAGAA
    GTCTGATGAT CTACTTCTTG CTGGATCAGA TAGTCGTCTT GCTAAACGAG
    AATGCAACAT CATCGTTATA TACAATCTAC TTGGGAAGTT GCAACTCATT
    TTGCTTTTCT TCTTTGGAGT ATTTTATATT ATTCTTGAGC ATGCTAGGAG
    GGTACTAAGA GTTTTGAAGC CTGTGAGAGT ATCAGCTACC AGCTTATAGT
    CAAACAAGGG ATTTTTATTT TCAAGGCTCT TTTCGACGTC TTCAGTTCCA
    TTTCTGAATT TTGCAGCAGC ACAGAGATTC TCGGTAACTA AGAATTTACT
    GCGGCATAGA AATTAGTCAG CGAATAATTG CAATATAAGG CCATTCATTC
    TTCGGGAAAG TGTGGATTTG AAGAGTTCTG ATTTGTATGG TATTTGTTGT
    ACAGGGTTAA AATTACAGGT TGGTCCTTCT AGGAATTGTT TGGTAATTTA
    TCTCTCCTTT TATTAATGTG GGAGAGAAAA TTGCCTGCAA TCTATTGAGG
    ATGTGTGTTG TCCAAAACAT AAATGGAGCA TACATTTTTG CAATGAAAAA
    TTCCTTTTCC ACTGATTTCA C

    Gene models with high sequence identity

    1. AT5G53050.3 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 1e-110; Score: 397.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Alpha/beta hydrolase fold-1 1.1e-15
    superfamily alpha/beta-Hydrolases 3.9e-11
    superfamily alpha/beta-Hydrolases 8.9e-30
    HMMPanther CARBOXYLESTERASE NP 2.9e-13
    HMMPanther ALPHA/BETA HYDROLASE RELATED 2.9e-13
    HMMPanther CARBOXYLESTERASE NP 2.1e-33
    HMMPanther ALPHA/BETA HYDROLASE RELATED 2.1e-33
    Gene3D no description 1.1e-09
    Gene3D no description 1.7e-29

    See the detailed result >

    AT5G53050.3

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G02340.1); Has 11083 Blast hits to 11081 proteins in 1482 species: Archae - 92; Bacteria - 8297; Metazoa - 245; Fungi - 229; Plants - 334; Viruses - 5; Other Eukaryotes - 1881 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR