K13116

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13116

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13116

Determination of introduced cDNA(s)

  • J013107E22 - Rice Full-length cDNAs - Original: J013107E22

    full reading [+] show sequence

    Nucleotide sequence: J013107E22 - full reading
    GCGCCAATTC GTCTTCCATC TCCTCAGCTT TCCAAGTTCT TCGCTTTCCT 
    TTGCACCATT CCGTATTCAA AGATCCACTG CCCTTTCTCT TTAACTGACG
    GGAAGACACA AGGAAGCCAT CTTGACAGCT CTAAGATCGG ACCTGCTGGC
    TGCTGCTGTG ATTTTTGGAT GGACCAGATG TAGGGATCTC CAAAGAAGCA
    ATCAGCCCTC TTGATTTACG CTGCCTCTTG CCACGGTGTG CACTGTGCAG
    TTGCAGAGTA GAGCATGGCA TTCAGTCACC TCCTCCACGC CCTCCTCGTG
    GCCGCGGCGT TGCCGCTGCT CCTTCTCCCC CGTGCTGCAG ATGCTGGCGA
    GATCGGGGTG TGCTACGGGA GGGACGCGAA CAACCTGATC GACCCACCGG
    CGGCGGTGAG CCTTCTGAAG GCGAACGGCA TCTCCGCGGT GAGGATCTTC
    GACGCGGACC AGACGGTGCT GGACGCGATG GCGAACACCG GCATCAAGGT
    GATGGTGGCG ATACCCAACG CCGATCTGGC CGCCGCCGGC CAGGATCTGC
    GCAGCGCGAC CGACTGGGTG ACGAACAACG TGGTGCCGTA TCGCAGCCGG
    GGCACGCTGA TCAACGGCGT CGCCGTCGGG AACGAGGTGT TCAGGCAGAG
    ACCCGAACTG GCCGGGATGC TCGTCTCGGC CATGCGAAAC TTGCACAAGG
    CGCTGGAGAA CCTGAACCTG GCGAACGACG TAAAGGTGTC CACGCCGATC
    GCCTTCGATG CGCTCAAGCA GTCGTCCCCT CCATCTGCGG GGGAGTTTAA
    AGATGAGATC GCGCAATCGG TGATGAAGCC CATGATTGAC TTCTTGAAAC
    AGACCGGCTC GTACTTCATG GTCAATCTCT ACCCGTACTT CGCATACGTG
    GCTCAGCCTG ACACTAAGGT AGCACACGCG ACCTATGCAT TCAACGATTT
    TTACCAGACC ACCGGCCGGG CTAGTGGATC GTGTGACTTT GCCGGTGCTG
    CTTCTATTGT CAACCAGCAA CCAAAAATAG GAAACTGCGT GCTCCCACCA
    AACAATGCTG GGACAGAACA AACTGCAATT GAAGATCAAT CGACTGCAAA
    CTTACCAGCA ACAGCTTGGC AGTGAGGATG GATTAAAGAA TCACTTCATA
    TTTTTCTGCA GAGAAAAAAA TAATGGTACC ATTAATAATT AGTTGGGATT
    GAAGAGACGA ATAAATGTAC CGTTCACTCC TGTTGAATG

    Gene models with high sequence identity

    1. AT4G26830.1 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 5e-44; Score: 175.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 17 2e-50
    HMMPfam X8 7.5e-12
    HMMSmart X8 3.6e-06
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.7e-60
    superfamily Glycoside hydrolase, catalytic core 9.4e-56

    See the detailed result >

    AT4G26830.1

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G55180.1); Has 2849 Blast hits to 2768 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 2823; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR