K12942

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12942

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12942

Determination of introduced cDNA(s)

  • J013002I02 - Rice Full-length cDNAs - Original: J013002I02

    full reading [+] show sequence

    Nucleotide sequence: J013002I02 - full reading
    GAAGCGAACC CAGCGGAATT CGTTGGGCAG CGGGTGCGGG AGCAGTAGAG 
    GAGGAGAGGT AGATGGATTG AGCAATCAAG CCCTGCTCCG GCCGCCGCCG
    CCGCCGCCGC CGCTGCCGCC GGGCGATCCC CTTACCCTCG CTCTGTGCAC
    CCGCACCCCG CACTTACCCC CTCCATGGCG TGATCCGATG ATAGCAACGA
    GAGCGGTGCT TCCCCTCTCC CTGACGGCGT CGGCCTCCGG CCTGTACGGC
    GCGCGCACCA AGAAGAGGAG GAAGCTGCTG CTGCTGCCGC GGCTGCCATG
    TCGCCCAATC TGGAGAGCCA CATCAAGAGC CAGGTGCCGG CGCTGCTGCT
    GAGGCGCTTC TTCGGCGGGG CGGGGCGGCG GCGGGTGTTC GTGCAGACGG
    AGACTGGGTG CGTGCTGGGC ATGGACCTCG ACCGCAGCGA CAACGCGCAC
    ACGGTGAAGC GCCGGCTGCA GCTCGCGCTC AACGTGCCCA CCGGCGAGAC
    CTCGCTCACC TTCGGCGACC GCGTCCTGGA GAATGACCTC TCCTTCATCC
    GCCCGGACTC GCCGCTGCTG CTCACCCGCA ACAGCATCAA CCGGAGCTGC
    TCCACGCCCT GCCTCTGCCC GGTGTCCAAG GACTTCGAGC ACAAGGATCG
    CAGCGGCCTG GTCGAGATGC TCGGCTGCTC GATCAGCTGC GCCCGCGTGA
    AGCGCCTCGT CGACGACGTG GTCACCGCCA TCAGGAGCGG CGTGGATCGG
    GTCCCCATTG GCAGTGGGCT TGGTGGCTCC TACTACTACA GGAACATCTC
    CGGCGACAGG GTTGCCATCG TGAAGCCGAC GGATGAGGAG CCTTTTGCAC
    CCAACAACCC GAAGGGGTTC GTCGGGAGAG CGCTTGGGCA GCCGGGACTG
    AAGAAATCTG TCAGGGTGGG AGAGACAGGG TTCAGGGAGG TGGCGGCGTA
    CCTGTTGGAT CATGATAACT TCGCAAATGT TCCTCCGACG GCGTTGGTGG
    AGATCACACA CTCAATTTTC CATATCAATT GTCCGGTGAA CGGCGGCAGT
    CCAGCTCATG ATCAGAAGCA GCAGGTTTCC AGCAAGATCG CTTCGTTTCA
    GCAGTTCATC GCGCATGACT TCGATGCCAG TGATCATGGC ACGTCGAGCT
    TCCCGGTTGC TGCTGTTCAT AGGATCGGCA TACTGGATAT CAGAATTTTC
    AACACTGACA GGCATGCTGG TAATGTGCTG GTGAGGAAGC TTGATGGTGG
    CACCGGTCGC TTTGGTTGTC AGACGGAATT GTTTCCAATT GATCATGGCC
    TGTGCTTGCC AGAGAATTTG TAGGACCCTT ATTTCGAGTG GATCCACTGG
    GCTCAGTCAT CAATCCCATT CTCTGAAGAG GAGCTCGAGT ACATTAAGAA
    TCTTGATCCA ATGAGGGATG TGGCAATGCT GCGTAGGGAG CTTCCTATAA
    TCCGCGAGGC CTGCCTTCGT GTCCTGGTGC TGTGCACAAT CTTCCTTAAG
    GAGGCTGCTG CTTCTGGTCT TTGCTTGGCA GAGATAGGTG AGATGATGAC
    CAGGGAGTTC AGAGGGTTGG AGGAGGAACC GAGCAAGCTG GAGGTTGTCT
    GCATGGAAGC TAGGAGAAAA TTAGCTGAGT GGGAACCATA CTCACCTGTC
    ATCGAACAAG GGGAGGACAT GGATTTCCAA TTCTCACTGG ACATGTTAGG
    AGAGTACAAT GATGTGATTA GGTCACCAAG ATTCAATGGC TTAGGAGCAA
    AGGGGAATGG TTTCAGAAAC CCTCTTTCAA AGCTTGTGGA GAGCATCGAT
    GAGGACAATG ATGATGATGA TGGCCGAAGT GAATCTTCCA AGCGTTCATC
    GGAGCGTGTC CATTCTGGAG GGTTGAAGTT CCCCAGTGCT GATAAATCCA
    GCGGTTCTAA CGGCAGTGTG CATGCTCTGA ACAGGAGTGC AGACGAACAG
    CTTCCATCAA GTGTATACTT CGTCAGGCTG TCGGACATGA ATGCAGAAGA
    GTGGAATATA TTCCTTGAGA AGTTCCAGGA GCTGCTGAAA GAAGCTCTGC
    AGGAGCGTGC GGCGGCTGCA GGGCAGCGGA TGAAGCAGCG GCTGGGCACT
    TCCTGCAAGT TTTGAGTAGG ACCATAGAGC AGCAGAGAAG AAAAATAATG
    TAATGCTTGC TACTTGTGTT GCTTATTATG GAGTGAGTAC AGGAAGGGAT
    ATATGCTCAT GTGAGAAATG CCTACAGCTT TGTGCAATGT TGCCATGTAA
    ACTTGTTATG TTCAGGTAGA CAAGATCAGG ATGGTGATGG GTGTGGAGAA
    GGGCTATTAT GCATGTTGAT TAACTATGTT AAACAGGTGC TTCTTAATAA
    ATGCTTGTCA GCTTGTGTAT ATTGTGTTAG ATGCCAAATA TGTCAATGGT
    GTTTTTCATA GCTGTTGGTG AACATTCTTT GTGCTGTGAG ATGTAAATAT
    GCTCTCTTTT GATGT

    Gene models with high sequence identity

    1. AT2G03890.1 [+] show detail - phosphoinositide 4-kinase gamma 7
      E-value: 0; Score: 653.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 0.0002
    HMMPfam Phosphatidylinositol 3-/4-kinase, catalytic 1.5e-23
    HMMPfam Phosphatidylinositol 3-/4-kinase, catalytic 1.1e-07
    HMMPanther gb def: T17H3.7 0.00062
    HMMPanther FAMILY NOT NAMED 0.00062
    superfamily Ubiquitin-like 2.7e-06

    See the detailed result >

    AT2G03890.1

    Model type
    Protein coding
    Short Description
    phosphoinositide 4-kinase gamma 7
    Curator Summary
    Phosphoinositide kinase which undergo autophosphorylation and phosphorylate serine/threonine residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains.
    Computational Description
    phosphoinositide 4-kinase gamma 7 (PI4K GAMMA 7); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G13640.1); Has 652 Blast hits to 635 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 175; Fungi - 87; Plants - 284; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR