K11330

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11330

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11330

Determination of introduced cDNA(s)

  • J023145A02 - Rice Full-length cDNAs - Original: J023145A02

    full reading [+] show sequence

    Nucleotide sequence: J023145A02 - full reading 
    GATAGGTGTC CATAGCAAGC AGAGCAGGAG CAGAGCCAAC TGCACAAGGC 
    AAGGCAGGGG GCCTCTCCTC GCTGTTCTAC TGCTGCTATA CTCTGGCATC 
    GCGTCGCGCG CGCAAGCAAA AGGGTAGTTC CTCAATCAAA CGCTCCAAGA 
    GAAATCACCC CGCCACGCCA CGCCGCGCCG GGCTGGGCTG CTGCTCCCAG 
    ATCTCGCCGA GCGGGGCGCT CGATTATGTG GGATTAGGTA GATGAGGGCG 
    GCGCTGTTCG GTGCCGAGAG GAGCGGGGTA GTGGACCACG GCGGCGGCGA 
    TAAGGAGGAG CTGTTTTGGC CGGCGGGGAA GGGGGGGCTG GTGGTGGTGG 
    AGCCGAGGTC GGTGCTGGAC TGCACGCGCA GCCCGAGCCC GCCGTATTCC 
    ACGTCGACGC TGTCGTCGTC CCTGGGCGGC GGCTCGGCGG ACTCGACCGG 
    TGTGGCGGCG GTTTCGGAGA GCAGCACCGC CGCCGCCGGA GCCACCAAAT 
    GGGGAGCCCC AGGCGAGCAT GGTGGCGGCG GGAAGGAGGA GTGGGGCGGC 
    GGGTGCGAGT TGCCCCCGAT ACCTGGAGCA CTGGATGTGG GGCTCGTCGG 
    GGGCGAGGGC TGGGACGCCA CGGCCACGCT CGGCAACGCA GCCGGGCCGG 
    ACCAGTCGTT CTTGAACTGG ATCATTGGGG CCGCCGGCGA CCTGGAGCAG 
    CCTGGTCCGC CGCTTCCAGT GCTCCAGCAG CCGCTTATTG ACAATGCGGG 
    GTTCGGGATC CCGGCCGTGG ACACCATGGG CTTCTCTCTG GATCACCCCC 
    TCAGCGGCGT CGCCTCCGAC CTCTCGTCCT CCGGTGCGCA CACTGCCACC 
    GGCGGTGGCG GCAAGGCCTC ATTAGGGTTC GGTCTCTTCT CGCCGGAGGC 
    CACCTCCCTC GAGCAGCCGC CGCCTTCGAT GCTGTTTCAC GAAGGTATCG 
    ACACGAAGCC CCCTCTTCTG GGTGCGCAGC CGCAATTTCT CCTGAACCAC 
    TACCAACCCC AGCCACCCAA CCCCGCCGCA GCCTTGTTCA TGCCTCTCCC 
    GCCCTTCCCC GAGCACAATC ACCAGTCGCC GCATCTCCAG CCACCGCTCA 
    AACGCCACCA CGCCATTCCA GATGACCTCT ACCTCGCCCG TAACCAGCAG 
    CAGTCATCCG CGGTGGCGCC AGGTCTCGCC TATTCACCAC CGCTACATGG 
    CCCGGCTCCG TTCCAGCTCC ATCCTTCGCC GCCACCGATT CGCGGGGCAA 
    TGAAGTCGAC GGCGGCGGAG GCGGCGCAGC AGCAGCTGCT GGACGAGTTG 
    GCAGCGGCGG CAAAGGCAAC CGAGGCTGGC AATTCCGTTG GCGCGCGAGA 
    GATATTGGCG CGGCTCAATC AACAGCTTCC CCAACTTGGG AAGCCCTTCC 
    TCCGCTCCGC CTCCTACCTC AAGGAGGCCC TCCTCCTCGC ACTCGCCGAC 
    AGCCACCATG GCTCCTCCGG CGTCACCTCG CCGCTCGACG TTGCCCTCAA 
    GCTTGCAGCA TACAAGTCTT TCTCTGACCT GTCACCTGTG CTCCAGTTCA 
    CTAACTTTAC CGCAACACAG GCGCTTCTTG ATGAGATTGG TGGCATGGCA 
    ACTTCCTGCA TCCATGTCAT TGACTTTGAT CTCGGTGTTG GTGGTCAGTG 
    GGCTTCCTTC TTGCAGGAGC TTGCCCACCG CCGGGGAGCT GGAGGTATGG 
    CCTTGCCGTT GTTGAAGCTC ACGGCTTTCA TGTCGACTGC TTCTCACCAT 
    CCACTGGAGC TGCACCTTAC CCAGGATAAC CTCTCTCAGT TTGCCGCAGA 
    GCTCAGAATT CCTTTCGAAT TCAATGCCGT CAGTCTTGAT GCATTCAATC 
    CTGCGGAACT CATTTCTTCC TCTGGTGATG AAGTTGTTGC TGTTAGCCTC 
    CCTGTTGGCT GCTCTGCTCG TGCACCACCG CTGCCAGCGA TTCTTCGGTT 
    GGTGAAACAG CTTTGTCCTA AGGTTGTCGT GGCTATTGGT CATGGAGGTG 
    ATCGTGCAGA CCTTCCATTC TCGCAGCATT TCCTGAATTG TTTCCAGTCC 
    TGTGTGTTCC TCCTTGACTC GCTTGATGCT GCTGGTATTG ATGCTGATTC 
    TGCCTGCAAG ATCGAGAGGT TCCTAATTCA ACCAAGAGTT GAGGATGCAG 
    TGATTGGGCG GCACAAGGCG CAGAAAGCTA TAGCATGGAG GAGCGTTTTT 
    GCAGCAACTG GGTTTAAGCC CGTTCAGCTC AGCAACCTCG CCGAGGCACA 
    GGCAGACTGC CTCCTGAAGC GGGTGCAGGT CCGAGGATTC CATGTGGAGA 
    AACGCGGAGC TGCTCTTACG CTCTACTGGC AGCGTGGGGA GCTTGTATCC 
    ATATCATCTT GGCGGTGCTG ATCAGCCATA AGCTTCACTC CACCAAGGTT 
    CCACCACCGT TTGCAAGCAT CGACCACTCC AGTAATGTCC ATTTATTCTT 
    GCAATTAAAT GTTGCAAATG AAATTGTTGT CTTGAGCTGT TGAACTCTTC 
    ATATTGCTTT TCGTTGCAGC TTATTAGCTA GCCTAGTGGA TTTAGGAATA 
    TTGGTGTCAG TCTCTATAGC TAATGATGTT GCTTTAGGTT GTTGCCATGC 
    TCTGCTCAAT TAGCCATGAT CATCTCATTG GAAACACTGC TTATGAGTAG 
    AGACTAGAGG GTAATTTAAC CTATCAAATG GTTGTGTGGT ACAGAATTAA 
    TATTATACTG CTGTTGCTCT GT

    Gene models with high sequence identity

    1. AT4G00150.1 [+] show detail - GRAS family transcription factor
      E-value: 1e-76; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Transcription factor GRAS 41.277
    HMMPfam Transcription factor GRAS 6.8e-82

    See the detailed result >

    AT4G00150.1

    Model type
    Protein coding
    Short Description
    GRAS family transcription factor
    Computational Description
    HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR