K11307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11307

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11307

Determination of introduced cDNA(s)

  • J013107E22 - Rice Full-length cDNAs - Original: J013107E22

    full reading [+] show sequence

    Nucleotide sequence: J013107E22 - full reading 
    GCGCCAATTC GTCTTCCATC TCCTCAGCTT TCCAAGTTCT TCGCTTTCCT 
    TTGCACCATT CCGTATTCAA AGATCCACTG CCCTTTCTCT TTAACTGACG 
    GGAAGACACA AGGAAGCCAT CTTGACAGCT CTAAGATCGG ACCTGCTGGC 
    TGCTGCTGTG ATTTTTGGAT GGACCAGATG TAGGGATCTC CAAAGAAGCA 
    ATCAGCCCTC TTGATTTACG CTGCCTCTTG CCACGGTGTG CACTGTGCAG 
    TTGCAGAGTA GAGCATGGCA TTCAGTCACC TCCTCCACGC CCTCCTCGTG 
    GCCGCGGCGT TGCCGCTGCT CCTTCTCCCC CGTGCTGCAG ATGCTGGCGA 
    GATCGGGGTG TGCTACGGGA GGGACGCGAA CAACCTGATC GACCCACCGG 
    CGGCGGTGAG CCTTCTGAAG GCGAACGGCA TCTCCGCGGT GAGGATCTTC 
    GACGCGGACC AGACGGTGCT GGACGCGATG GCGAACACCG GCATCAAGGT 
    GATGGTGGCG ATACCCAACG CCGATCTGGC CGCCGCCGGC CAGGATCTGC 
    GCAGCGCGAC CGACTGGGTG ACGAACAACG TGGTGCCGTA TCGCAGCCGG 
    GGCACGCTGA TCAACGGCGT CGCCGTCGGG AACGAGGTGT TCAGGCAGAG 
    ACCCGAACTG GCCGGGATGC TCGTCTCGGC CATGCGAAAC TTGCACAAGG 
    CGCTGGAGAA CCTGAACCTG GCGAACGACG TAAAGGTGTC CACGCCGATC 
    GCCTTCGATG CGCTCAAGCA GTCGTCCCCT CCATCTGCGG GGGAGTTTAA 
    AGATGAGATC GCGCAATCGG TGATGAAGCC CATGATTGAC TTCTTGAAAC 
    AGACCGGCTC GTACTTCATG GTCAATCTCT ACCCGTACTT CGCATACGTG 
    GCTCAGCCTG ACACTAAGGT AGCACACGCG ACCTATGCAT TCAACGATTT 
    TTACCAGACC ACCGGCCGGG CTAGTGGATC GTGTGACTTT GCCGGTGCTG 
    CTTCTATTGT CAACCAGCAA CCAAAAATAG GAAACTGCGT GCTCCCACCA 
    AACAATGCTG GGACAGAACA AACTGCAATT GAAGATCAAT CGACTGCAAA 
    CTTACCAGCA ACAGCTTGGC AGTGAGGATG GATTAAAGAA TCACTTCATA 
    TTTTTCTGCA GAGAAAAAAA TAATGGTACC ATTAATAATT AGTTGGGATT 
    GAAGAGACGA ATAAATGTAC CGTTCACTCC TGTTGAATG

    Gene models with high sequence identity

    1. AT4G26830.1 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 5e-44; Score: 175.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 17 2e-50
    HMMPfam X8 7.5e-12
    HMMSmart X8 3.6e-06
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.7e-60
    superfamily Glycoside hydrolase, catalytic core 9.4e-56

    See the detailed result >

    AT4G26830.1

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G55180.1); Has 2849 Blast hits to 2768 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 2823; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR