K11124

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11124

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11124

Determination of introduced cDNA(s)

  • J023108D18 - Rice Full-length cDNAs - Original: J023108D18

    full reading [+] show sequence

    Nucleotide sequence: J023108D18 - full reading 
    AAAAAAAACC TCCAATTTAG GTCGATTCCA TTCGAACATT CCTCCTCCAA 
    GACTCCACAA GTCCAGAGGG AGAAAGTGTG AGAAGAATGT GGCGGAAGGG 
    GAACAAGCGG TTCGGCGGCG GCGGCGAGCC GGCGGCCAAG CGCCGTGCCG 
    CCGGGGACGA CGGGCCCTCC GAGAGCGCCG ACGACGATAT CGTCGTCGCC 
    CAGATATCGA AGAACAGGAG GGTGGCGGTG CGGACCTGGA ACGGCAAGGT 
    CGTCGTCGAC ATCCGCGAGT TCTACGAGAA GGACGGCAAG ACCCTCCCCG 
    GCCGCAAAGG TATACAGCTC CCGATGGATC AGTGGAAGAT ACTGAGGGAC 
    AATATCAAAG CTATAGATGA GGCCATCAAG GAGAATGCGT GATCGGAGCC 
    CATTCTCTTG TGATGCAAGT AGACTAAGCC TACGTCTGTC TTTTATGACT 
    CCGAGGAATA TTGCACTTTT GGTATGGTAA TCTTCATTAC CCTGTCTAGT 
    AATATCAAGT AATGTTTTAG TTTGGTCATG CGCGGAAAAT GTGGCCTTGT 
    CTGGTATTGT GCCAAAGAAG CAGCTATGTG CCTAATGTGC TCTCCTCATT 
    TTGTACGTTG GGTAAGGAGG TCCATCTGTT AATGGTTGGT TGGTTTCTGC 
    GTGTACTTAT GTTTTACTTT AAATCTCTAA TGCCGCTTTG T

    Gene models with high sequence identity

    1. AT5G09250.1 [+] show detail - ssDNA-binding transcriptional regulator
      E-value: 3e-21; Score: 99.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transcriptional coactivator p15 7.3e-28
    superfamily ssDNA-binding transcriptional regulator 5.7e-21
    Gene3D ssDNA-binding transcriptional regulator 4.9e-19
    HMMPanther Transcriptional coactivator p15 1.1e-21

    See the detailed result >

    AT5G09250.1

    Model type
    Protein coding
    Short Description
    ssDNA-binding transcriptional regulator
    Curator Summary
    putative transcriptional co-activator (KIWI) mRNA, complete
    Computational Description
    KIWI; FUNCTIONS IN: protein binding, transcription coactivator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator p15 (InterPro:IPR003173), ssDNA-binding transcriptional regulator (InterPro:IPR009044); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09240.1); Has 436 Blast hits to 424 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 115; Plants - 101; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR