K10942

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10942

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10942

Determination of introduced cDNA(s)

  • J023049J05 - Rice Full-length cDNAs - Original: J023049J05

    full reading [+] show sequence

    Nucleotide sequence: J023049J05 - full reading 
    GAGCGGCGGC GGCGGCGGCG GCGGCGGGCG TCGCCGGCGA GCAGAGCGGA 
    GGAGGGAGGA AGCGCGCGAG CGAACGATGG AGGCGGCGGC GGCGGTTACG 
    AGGTTGTCCT TCGTCCCCCT CGCGGCGGCT GCGAGGCCAC TCCTCGCCGG 
    CTTCATGCGC CCCCGAGTCT TCGCGTCCAT CTCCTCCTCC TCCTCCTCCT 
    CTCCCTTCTC CGGTGGAGGC GGAGGCCACT TCTTCGGAGG CGGAGGCGGA 
    CGCGGTAGGG GCGGCGGCGG AGGCGGAGGC GGAGAAGAAT ACGGTGCAGG 
    TGCTGCTGCA GCGGCCTCCG CCGCCGCCGC CGTGGTTCTC GGCGAGACCG 
    AGACGGCGGA CGCCGACGTC ATCCTGCTCC GCGTCGGGGG GATGTCGTGC 
    GGTGGATGCG CCGCGAGCGT GAAGCGGATT CTCGAGAGCC AGCCTGAGGT 
    TACTTCTGCC ACAGTCGACT TTGAGAAAAA AACGGCTGCC GTGTGGACAA 
    CACCTGAAGC CAAGGCAACA AAAGACTGGC GGAAGCAACT GGGCGAAAAG 
    CTTTCACATC ACCTGAGCAC TTGCGGATTT CAGTCTCATC TGCTTGATGA 
    AGAAGAACCT GATTCTGGAT CTCAACAGTG AGAACCCTTG CAGTTTTACA 
    ATCAGAGGGT TCTTGAGAGC AGTACCTACC TACTTACCCT TGTGGAAGTT 
    ATATATCGTC TCTGAAAAAG TACATTCTGT TTGAGAGTTT TGTAGGTCTC 
    AATCACGATT TTGTTCTTGA ATCCAGCCAC TGACAACTAC AAGGCCTAGA 
    GATTATGCTC AAATCCTTAT ACAGGAAATA GAGAAATTTC TTTTGGATTT 
    AAGGTTCAAA TACAGAAGTA GAATTCGATC ATTGTATATT GTCACTACCG 
    ATATCAATGA ACATATATTG TC

    Gene models with high sequence identity

    1. AT4G33520.3 [+] show detail - P-type ATP-ase 1
      E-value: 1e-23; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heavy metal transport/detoxification protein 3.6e-12
    PatternScan Heavy-metal-associated, conserved site 0
    Coil coiled-coil 0
    HMMPanther COPPER-TRANSPORTING ATPASE PAA1 4.6e-19
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 4.6e-19
    ProfileScan Heavy metal transport/detoxification protein 15.806
    HMMPfam Heavy metal transport/detoxification protein 1.3e-13
    Gene3D no description 5.4e-09

    See the detailed result >

    AT4G33520.3

    Model type
    Protein coding
    Short Description
    P-type ATP-ase 1
    Curator Summary
    Encodes a putative metal-transporting P-type ATPase.
    Computational Description
    P-type ATP-ase 1 (PAA1); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type copper-transporter (InterPro:IPR001756), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: P-type ATPase of Arabidopsis 2 (TAIR:AT5G21930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR