K10904

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10904

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K10904

Determination of introduced cDNA(s)

  • J033097L06 - Rice Full-length cDNAs - Original: J033097L06

    full reading [+] show sequence

    Nucleotide sequence: J033097L06 - full reading
    GGTCTGCTTA CCGCCTTCTA CTCCGTCTTC TTCCTCCTCT CTCTCTCTCT 
    CTCTCCCTCG TTGCCGTCGC GACTCGCGAG GAAGACTGGT GTTTTGGGGG
    TACAGGGTTT GGTTCATCGA GGCGATGGAG AGCGGAGCCG GATCCTTGGA
    GGCGCGGCCG GGCGTCCTCG TCGTCGGCGC GCCTGGCGTC GGCAAGAGAA
    CCATCCTCTC CCGACTGCTT GCAGCTGAAA TACCGGACAC ACATGACTTG
    TCATCAGGTG TGCTGTGTCA GGGGTGGAAC ATTGACACAA AGTACTACTC
    AGCAGATCTT TCTGTTTGGA CGGCACATCT TGGGCAAGGG TTTTCTCTTG
    ATTCCCTCCC TCATCTCGAC CAGTTGGATG CTCTTGTTAT GGTCTTCGAT
    ATGAGTGATG AATCATCCTT CCTTACTCTC CAGAACTGGG TTTCTAGTGT
    TGATGTTCAG AGGTTTGAAA TTCTGTTGTG CATTGGAAAT AAAGCAGATC
    TTGTGCTTGG CCATGGTGCA CACGTAGAAT ATAGGAGGCG TATGCAAAAG
    ATTGGCGAGT CAAGTACTGA TCCACATCCT GAATATTTGG ATTTTGGGAT
    AAACGAAAGT GAAGGTTGTG GATTGTTATC AGAGGAAGAA CCACAAATAG
    AGATCAGAGA CTCCGCTTCA CATTGGTGCA TTGAACACAA TATTGAGTAT
    GTCAAAGCTT GTGCTTCCAA TGCTGACTTT GATAAATGTC TATCGGTGAA
    TGGAGATAGT CAAGGCTTAG AGCGACTCCT TGGAGCCCTT TCTGCACACA
    TGTGGCCTGG AATGATTCTG AAATCTGGAA ACAGAATAAC CGTTCCATCC
    TTGGTTGAGA AAGAAGAATC TACAGATGAT GAATCCAATT ACGAATTTGA
    GTACGAAGTT CTGTCCCATG GATCTGATGA ACAATGGGAA TTCATTGGTG
    AGTCAAGTAC GTCAAGAGAC TTGGAGGGAT TGAATGAAGA TACAGCTACT
    CATGATAAAA CTAATCAGGT TGTGGATGCT GATGCTAATT CAGTGGCATC
    CAATCCTCTT CCAAATGGCA GAATGACAGA AACTGCTGAG GAAAAACTGG
    TACCTCAGAG CCACAAAAGC GAGGTTAGTA ATGATATGGA TAACACACAA
    GCAGATGCTT CAGAGAAACT GCAAGCTGGT ATCCCAGAGG GTAACAAGCT
    ATTTGAAGAT GAGCATTACG GTCTAGATGA TCTGGAGCGG CTAATGTCAG
    AGATTGGCAA CATGCGCTCC AATTTAAGGC TCATGCCTGA CTTCCAAAGG
    AAAGAGATGG CTGCCAAGCT TGCCATGAAA ATGGCAACCA TGTTTGGTGA
    TAACGACGAA GAGGGCTCTG AAGATATCTG ATTCAATTCA CGGAGCCCAC
    CTTTTGCATG TCTTCAAACA TATGTTCCCA GTTTATGGCG TGCTGATTTG
    TACAGGCAGA TGGGCCGCAG GCCGTGTAGG CATTTCCATC GGCTATCATA
    ATTCCCAGTG AAATTTTGTA CCTTAGTAGT TCCATATTTA CCATTCTTAC
    TGCTGTAAGT TGTATACTGT ATTATTTGAA ATTAAAGTTC TCT

    Gene models with high sequence identity

    1. AT5G65960.1 [+] show detail - GTP binding
      E-value: 4e-86; Score: 315.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.4e-12
    HMMPfam Alpha-/gamma-adaptin-binding protein p34 3.9e-29
    HMMPfam Ras 2.4e-08
    HMMPanther RAS-RELATED GTPASE 1.4e-07
    Gene3D no description 3e-06

    See the detailed result >

    AT5G65960.1

    Model type
    Protein coding
    Short Description
    GTP binding
    Computational Description
    GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial Rho-like (InterPro:IPR013684), Alpha/gamma-adaptin-binding protein p34 (InterPro:IPR019341); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR