K10827

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10827

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10827

Determination of introduced cDNA(s)

  • J013071P15 - Rice Full-length cDNAs - Original: J013071P15

    full reading [+] show sequence

    Nucleotide sequence: J013071P15 - full reading
    GATGCGAACA ACGCTTTTAT GAATCGTCTC ATCTTCATGT CCTATTACTC 
    CTACCACTGA GAGAGGGCCA CTCTTTCCCC TCGAGTTCTT CACCGGCTTC
    TTTCCCCTCC TCTCCGGACC AGGGAAGCAG CTAACTGTCT GCGCAAGAAA
    GGTGGTTCAA GCACGATGGG ACGGAACCAT CTTTGCCTGG TCACTTGCTT
    GTGGATTCTG TCATGCGCAG TTCTGCTTCA TGCTTCTCCT GATGGATTGC
    TGAGAATTAG CCTGAATAAG AAGAGATTGG ACAAGAAGAC CTTGGACGGT
    GCAAAATTGG CAAGGGAGGA AAGCCATCGT CTGAGAGCCG ACGGTTTAGG
    TGATGACATA GTTCCTTTGG ACAACTACCT GGACACGCAG TACTTTGGAG
    AGATCGGCAT CGGCACTCCA CCACAGAACT TCACTGTGAT ATTCGACACT
    GGAAGCTCCA ACTTGTGGGT TCCATCAGTG AAATGTTATT TTTCGATAGC
    ATGCTACTTA CACCACAGGT ACAAGTCAAA AGGGTCGAGC AGTTACAAAA
    AGAATGGAGA ATCTTGCAGC ATTTCCTATG GGTCTGGATC AATTGCTGGT
    TTCTTCAGTG AGGATAGCGT GCTAGTTGGG GATCTTGCTG TGAAAAATCA
    GATGTTCATT GAGACAACCA GGGAACCGAG CCTTACTTTC ATCATCGGGA
    AGTTTGATGG AATTCTTGGA CTTGGATTTC CGGAGATCTC TGTGGGAGGA
    GCCCCTCCAA TTTGGCAGGG AATGAAAGAG CAGCAACTGA TCGAGAAGGA
    TGTATTCTCC TTCTGGCTCA ACCGCGATCC TGATGCACCG ACAGGGGGTG
    AGTTAATCTT TGGTGGTGTA GACCCAAATC ATTACAAGGG GAGCCATACA
    TATGTTCCTG TTACCCGCAA AGGCTACTGG CAGTTTGAGA TGGGGGATCT
    TCTTATTGAT GACTACTCAA CTGGGTTCTG TTCTGGTGGT TGCGCCGCTA
    TTGCGGATTC AGGGACTTCA TTGCTCGGTG GCCCAACAAC TATTGTTGCT
    CAAATTAATC ACGCAATTGG AGCTGAGGGA ATTGTTAGTA TGGAATGCAA
    ACAAGTTGTG CGGGACTACG GGGACATGAT CCTCGAGATG CTCATAGCAC
    AGGCAAGCCC CATGAAACTG TGCTCTCAGA TTGGTCTCTG TGCATTTGAT
    GGTACTCGTT CTGTCAGAAA CAATATAGAG TCTGTTGTTG ATAAAGAAAA
    GGTGGGCTCA GATCTTTCCT GCACTGCTTG CGAGATGGCT GTTGTCTGGA
    TACAGAATCA GCTCCGACAT AACCAAACAA GGGAGCTCAT TTTGCAATAT
    GCTGACCAGC TCTGCGAGCG TCTCCCAAGC CCCAATGGCG AATCGGCAGT
    CGACTGCGAT GAGATCTCAA ACATGCCGAA CCTTTCATTC ACCATAGCAA
    ACAAGACCTT CACCTTGACA CCAGAGCAGT ACGTAGTGAA GCTGGAGCAG
    CAAGGTCAAA CTGTTTGCAT CAGCGGGTTC ATGGCGTTCG ACGTGCCACC
    TCCACGCGGC CCACTCTGGA TTCTTGGAGA CGTGTTCATG GCTGCATACC
    ACACTGTCTT CGACTTTGGC AAAAACAGGA TTGGGTTCGC CGAGTCTGCT
    TGAATTGCTT GGCTAGGGCC TTCAGGATCA TACAACATAT CAAGTATTGT
    AATGTTTGTT AGGCAGCTTG TTTACTCGGT ATTGTAACCT GGGAATGTCT
    AAAGGTATAG TGCATTAGTA GTAGCATGCA AAACCTTGTA GAGGAATAAA
    CGTTTTCACG ATGGAGCTGT ATCAGCTATG GATATGCAGA TATGGATCTT
    GGATGGTGCA ATGCAGATGT AATGAGCAAA TGAGCACGAT GAGAATTAGG
    GCTTTTTAAT CTGATCTCAT CATATAGGTA ATGGTTTGTC TGGCATATAA
    TGATGGGCCT AAAACTTCTG GCGAGGTTAA TAATGGCTGT ACTGACTGTT
    TATGCACCTT AACATTCAGA GTTCAAAATC TCTCATTAAC CAATTTGTGA
    TGGATGCAGC C

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 3e-177; Score: 619.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase A1 5.9e-29
    FPrintScan Peptidase A1 5.9e-29
    FPrintScan Peptidase A1 5.9e-29
    FPrintScan Peptidase A1 5.9e-29
    ProfileScan Saposin B 12.404
    ProfileScan Saposin B 12.107
    HMMPanther ASPARTIC PROTEINASE-RELATED 4.1e-223
    HMMPanther Peptidase A1 4.1e-223
    PatternScan Peptidase aspartic, active site 0
    HMMPfam Peptidase A1 3.9e-125
    HMMPfam Saposin-like type B, 1 1.1e-12
    HMMPfam Saposin-like type B, 2 6.8e-11
    superfamily Peptidase aspartic 5.7e-124
    superfamily Saposin-like 2e-23
    Gene3D Peptidase aspartic, catalytic 3.2e-83
    Gene3D Saposin-like 0.00052
    Gene3D Peptidase aspartic, catalytic 1.7e-21

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR