K10309

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10309

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10309

Determination of introduced cDNA(s)

  • J023003J19 - Rice Full-length cDNAs - Original: J023003J19

    full reading [+] show sequence

    Nucleotide sequence: J023003J19 - full reading 
    GAGGGGCTGA TCTGCAAATC GGGGAAAAGA GAACCCTATC TGCAATCGCC 
    TCTTTGCCTC CCCGTCTCGG CGGAAGCGCC CATCGATTCC TCTCTCCGGC 
    GAACACGCGG GTGGGCGGGT CGGGTCTCCT CTCGCCGAAG CGCCACCTCG 
    GCTCGGTGTG AAGTGATCCG ATTCGCTCAC ATGTCTGTCC AGGTAATTCG 
    GTGATTCGGC AAGGGCTGTA TTTATGCAGA ATGGTTCTCT GTCAAGGCTT 
    ATCTGCTGGA CACGCTCAGC TGCTTGCCTT TCCTGCGGCT AAGCATAATG 
    TCTCTTTCGC GAGAACATCG TGCCTGGGTA CTCCGGCGGG ATCATGGAGT 
    GTAAAACGTG CGCGACTTCA TGCCGAAAGG AAGAGTTTTT CCATGGGAGC 
    TTTGCGAGTT GGCACTGGTT TTGTTCAGAA TGACATGCTT GCATCGTTCG 
    GAAGGGATGA TTCTATCAAG GGCATTCCAT CACTGGCAGC ACGACACAGT 
    CAGCATCGAA GACTTGAAGT TGGCTGTCGA GCATCCTCTT TAGCGTCATT 
    CAGCTACCCT GAGTTGACTT CGAAACCCAG ATGGTGGTGG AGGACTGTAG 
    CATGTGTGCC CTACTTGCTT CCACTCCACA ACATGTGGTC ATATGCCGAT 
    GTCATCTACC AGCTACACAC ATACTTGCAG GGGTTTTCGT TGGTGTACAC 
    CTTCATCGAT ACAATGACAC TGTTTCCAGG ATGGCTTTTG CTGGTGATTT 
    TTATGACAGT GTACTTCTTT GTCGTGAGAC GGAAGTGGTC GCCGCACTTT 
    CTAAGGTTCC ATGTCATCTT GGCTATCCTC CTGGACACTG GCTCCCAAGC 
    AGTGGCAACA ATGTGCACCT GGATGCCCAG CATCGTGTAT CAGGGGACGC 
    CTATGCAGTA TTTCTGGATG GCTATTGCTT TCATACAGAT CTTCACAGTG 
    CTCGAGTGCA TGCGATGCGC TCTTGCTGGG ATGTACCCGA ATGTCCCTTT 
    CATATCTCAC ACGGCATTTA TCCATTCTGA TCTGAATCTG TTCAGGTAGC 
    CAACTGCCCA CCATATCAGT ATCAGAAGAC TGAAGGGAAG AAGAGCAAGT 
    AGGGTAGTAG TTTATTTTGT CATAGCTGCT TACAGTTATA TAGACTGTAT 
    TTAATTTATT TATATTTTCT AAGCCTCCTG TAATTGCTAT AAACATCACC 
    TTTTGCTGTT GCAACAAAAT TTGAACAGCA ATAAGATTAG ATATCTCGG

    Gene models with high sequence identity

    1. AT1G04940.1 [+] show detail - translocon at the inner envelope membrane of chloroplasts 20
      E-value: 2e-46; Score: 183.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G04940.1

    Model type
    Protein coding
    Short Description
    translocon at the inner envelope membrane of chloroplasts 20
    Curator Summary
    Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.
    Computational Description
    translocon at the inner envelope membrane of chloroplasts 20 (TIC20); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3); Has 279 Blast hits to 278 proteins in 76 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR