K10145

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10145

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10145

Determination of introduced cDNA(s)

  • J013114I10 - Rice Full-length cDNAs - Original: J013114I10

    full reading [+] show sequence

    Nucleotide sequence: J013114I10 - full reading 
    TGCGGCTCAC ATCTGAACCA AATCGTGCTC GGTCTCCGTC TCCACCTCCG 
    CATATCATCC TCCGCTTCGC TTCCGCTCGA TCGATTCCTC CCCTCCATCA 
    CCACCACTCC TCCGCCGCGT CGCCGTCGCC GTCACCGACA AGCCTCGCCT 
    CTCCTCGCCG GTTCGCCGTC GCGGCCGCCT CCTTTGTCCG CTCCAGCGCC 
    CTCCTCGGCC CGGATCGGCC CTTCCCCAGA TGGAGAGGGC ACTTGATTCC 
    TTGACGTACA AAGGCTCCAT TCCAGACGCT ATCCTTCAGT CAAGAAGGGA 
    TAACAAACTC TTTGTAGTGT ACATATCAGG TGAAGATGAG ACTTCGAGTA 
    GTTTGGAACA GTCGACACTT GTTAATGAAA GTGTGGCTGA AGTGATAGGC 
    AACTGTTGCG TATTCCTGCA TCTAAAACAA GGCAACGTCG ATGCATCCCA 
    ATTTTCAGCT ATATATCCAC AGAAGGCTAT CCCAAGTATA TCTGTCATTG 
    GACAGAATGG TGTTATGCTA TGGTGTCATG AGGGATACAT CAGCTCGAAA 
    GATCTGAAAG AAAATATTGA GAAAGCTTGG GCTACCCTTC ACCTGCAGGG 
    TACAGCAGCA GCCTTTCTGA CTGCATCACT TGCTTCAAGA ATGACTGAAC 
    CTGTGAATAC CACCCCGACC ACTCTACCTA CTCAAGGAGG CTCATCTGCT 
    GCAGAGAATC CCTCTACTTC ATCAAATCAA TCTACAGGAA CTTCTGGAGC 
    CAGTGGGTTT GCTAATCCTA CTGATTCGGT GGCACAGCCA CCTAGAAGCA 
    CAAGCCGTGA TGAAACTCCC AGCATAAGTG AAAAAGAATC CTCAAATTTG 
    GATTCAAGTC CAGGTAATAG AACTGTTCAA GAAAGGCCAG ATTCAGATAG 
    TGCGCAAGTT AAAGGTTCTT TGCCTGATCA TCCAAGGAGC TCAAATATAG 
    AAGGTTGTGC AAATCCAGTT CAATCAGGCA ATACAGCATC ACTAAAACAG 
    AAAAATAAAG TGGATGATGG TTTCACCAAA GTTTCCTCAG AGTCAGTTCC 
    TACCAGAGTA GCTAGTAGAG GTAAATCGTC AAAGGTAGCT GTGGATCAAG 
    ACAAGGCAAC AACCACTAGC ACCCCTATTG AACCTGCCCC TGTGAGGTCA 
    AATGATATTC AGCTGGTCGT TCGCATTCCT GATGGACCTA GTCTGCAGAT 
    TAAACTGACA AAAGATGATA ACTTAAGGAA GGTGAAGAAT TTTGTGGATG 
    AAAACCGTGC TAATGGGGCT GGATCTTACG ATCTTGCTAT GCTTTATCCA 
    AGAAAAGTTT TCACTGAACA AGACATGGAA GCCACGTTGC ATGAACTGGG 
    TATTGAAACC CGGCAGGCTC TCACTATTGT TCCACATCAT AAAACCATTC 
    GAGCAGCAAA GCGCCAATCA TCATCATCAC CCCATGAAGG GGATAACAAT 
    ATGGATGCAG ACAGCTCAGG TGGTTCGGGA TATTTCGGTT ATCTGAGAAC 
    TGCCCTATCG TTTGTGAATC CACTGTCCTA CTTGAGAGCA AATGCTGCTC 
    CATCAAACCC TGATCAGTTG GCAAATCAGG GGTCGCCACA GTACAGACCG 
    AGCACTGGAC CCTGGAATCG TCCTGGAGAG GACACTGCTT CGGAAAGCCG 
    TATTCCTGAT AGTGCGAGGC AACAGGCTGC TAGGGATACT AGCTCCGGGA 
    GCACCTTGAG GAGGCGGCCG AGACAATTCG GTGGCAACGT TCACAGTTTG 
    AGAAGTGATG ACCAAGGCCC ATCTGATGAT AGGAATGTTT ACTGGAACGG 
    GAATTCTACA GAGTTCGGAG GCGAAGATAA GAAATGAGAG CTGAGCACCG 
    GCAATATCAT GGCAGAGTTA AATATATACT TGGACAAATA ACACGATCTA 
    GGTAAATAAA TACAAACAAA TTTGAGATGT TAAATTCAGT GGTACCAGTA 
    CCACAACATA GACTTCTAGT GTAAAATGAT AATACATCTG ATGATTGGCT 
    GTGATGGTTC GTTTCCGGGA GCCGATTCTT CGTCAGTTTG GGTAGTATGG 
    AGAGATATTT TCGTTTGC

    Gene models with high sequence identity

    1. AT2G43210.2 [+] show detail - Ubiquitin-like superfamily protein
      E-value: 5e-69; Score: 259.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan UBX 16.59
    HMMPanther UBX DOMAIN-CONTAINING 2 1.7e-46
    HMMPanther UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAININ 1.7e-46
    HMMPfam UBX 3.6e-13
    Gene3D no description 1e-10
    superfamily Ubiquitin-like 5.6e-16

    See the detailed result >

    AT2G43210.2

    Model type
    Protein coding
    Short Description
    Ubiquitin-like superfamily protein
    Computational Description
    Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR