K10035

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10035

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10035

Determination of introduced cDNA(s)

  • J013055F13 - Rice Full-length cDNAs - Original: J013055F13

    full reading [+] show sequence

    Nucleotide sequence: J013055F13 - full reading
    GCTTCCTCGC CTTCCTCGAG TTGAGCTCTC GCTCCGCCGC CGGCCGCCGC 
    CTCGAGCTGG GAGGCGGCCA TGGGCGCCGC CGGCCTCCCG GCACCGGGAT
    GCCTGCAGAA ATTTGGACAT ATCGTTGATG CCGAAAGATT TGTATTAAAC
    ATGTCCAACC GTGGAATCCA TAAGGCACTC AGTTTTCAGT GCTTTGCTTC
    TGATGGGCGT GGCTTTGGAG CTGGTTCTAC TAATAGACGG AAAATTAAAA
    GCAAGAAGAG GCAAAAGGAT GTTGCACAGG AACCAAGCAA GGTAATATCT
    GGAGGTTCCA AGAACAGGGA CCAATGGGCA CTGGACTTAG GGACTCGAAG
    GGAAAGTAAA TATGCTAAAA CTGTCATGGA TAAGCAATTT CTAGAAAAAG
    TGGAAGCTGT TCGAAGATCT GCACTTGAGA AAAAGAAAGC TGATGAGAAC
    AAAAATTATC AAGCTATTGA TTATGATGCC CCAATTGAAT CAGATAAGAG
    TACAATTGGT TTTGGTACGA GGGTTGGAAT TGGCATAGCT GTCATGGTCT
    TGCTCCTCCT CCTCTTTCCC CTTCCTCTCG CCGCCCCAAA TCACCCGCCC
    ACCAAAACCC TCGCCGCGGC CTCCGCCGCA GCGGGATTCC GGCCACCACC
    AGCAGCCGCC GCGGCCACCG GGGCGCCCTC CTCCTCCTGC CCCCCGGCAC
    CGGCGACCGA CCATCCCCTT GCCCCCTTTC CCCGTCGGGT TGTGAGGCGA
    GATGAGGGAG CTGCGCGTCG CCGTCCTCAT CATCGCGGTC TCGCTGCCGT
    CCTTCTCCGC GTCCGACCGC CAAGGAGATG CCTTATATGA TATGAAACAA
    AAACTGAATG TTACTGGCAA TCAGCTTTCG GATTGGAACC AAAATCAAGT
    CAACCCTTGT ACATGGAATT CTGTAATTTG TGACAATAAC AACAATGTTA
    TTCAAGTAAC ATTGGCTGCT CGTGGATTTG CTGGAGTTTT GTCACCAAGA
    ATTGGAGAAC TGAAATATTT GACTGTCCTG TCCTTGGCTG GTAATAGGAT
    TTCCGGTGGC ATACCAGAGC AATTTGGTAA TCTTTCTAGT TTGACAAGCT
    TAGATTTAGA AGACAACCTT TTGGTGGGAG AAATACCAGC TTCTCTTGGC
    CAGCTTTCTA AGCTCCAGTT GTTGATACTT AGTGATAATA ATTTCAATGG
    ATCAATTCCT GACAGTCTAG CAAAAATCTC AAGCTTGACT GACATCCGGC
    TGGCGTACAA TAATCTGTCT GGTCAGATAC CTGGTCCGTT ATTCCAAGTA
    GCACGTTACA ACTTTTCTGG TAATCACTTA AATTGTGGAA CCAACTTCCC
    CCACTCTTGC TCAACCAACA TGTCCTACCA GAGTGGATCC CATAGCTCAA
    AAATTGGCAT AGTACTTGGA ACAGTTGGAG GAGTAATAGG ACTTCTCATT
    GTAGCTGCTC TCTTTCTGTT CTGTAAAGGG AGGAGGAAAA GCCATCTGTG
    GGAAGTTTTT GTGGATGTAG CAGGTGAGGA TGATCGACGA ATTGCATTTG
    GCCAGCTCAA GAGATTTGCA TGGCGAGAAC TACAAATCGC GACGGATAAT
    TTCAGTGAAA GAAATGTTCT CGGGCAGGGA GGTTTTGGTA AAGTTTACAA
    AGGTGTTCTT CCAGATGGTA CTAAGATTGC TGTAAAACGA TTGACTGATT
    ATGAAAGTCC TGGTGGTGAG GCCGCCTTCT TGCGTGAGGT GGAGCTGATT
    AGTGTTGCAG TTCACCGCAA TCTTCTAAAA TTGATTGGCT TCTGCACAAC
    ACAAACAGAG CGCCTCCTGG TATATCCATT CATGCAGAAT TTGAGTGTTG
    CCTACCGATT GCGAGATTTT AAGCCTGGAG AACCTGTCTT AAACTGGCCA
    GAAAGAAAAC GGGTGGCCAT TGGTACAGCA CGTGGACTAG AATATCTGCA
    TGAACACTGC AACCCAAAGA TCATACACCG TGATGTCAAA GCGGCGAATG
    TCTTGCTTGA TGAGGACTTT GAACCTGTTG TTGGTGATTT TGGACTAGCG
    AAGCTAGTGG ATGTGCAGAA GACATCTGTC ACTACTCAAG TCCGTGGAAC
    AATGGGTCAC ATAGCACCTG AATATCTATC CACAGGGAAG TCATCAGAGA
    GAACTGATGT TTTTGGCTAC GGGATCATGC TTCTTGAGCT TGTGACTGGC
    CAGCGTGCCA TTGACTTCTC ACGCTTGGAG GAAGAGGACG ATGTTCTATT
    GCTCGATCAT GTAAAGAAGC TACAAAGAGA AGGGCAGCTA GGATCCATTG
    TGGACCGCAA CCTGAACCAG AATTATGACG ACGAGGAAGT TGAGATGATG
    ATACAGATAG CATTGCTGTG CACACAGTCA TCGCCCGAGG ATCGGCCATC
    CATGTCAGAG GCGGTTCGGA TGCTAGAAGG CGAGGGGCTG GCGGAGCGGT
    GGGAGGAGTG GCAGCAGGTG GAGGTGACAA GGAGGCAGGA GTACGAGCGG
    ATGCAGCGGC GGTTCGACTG GGGAGAGGAC TCTGTCTACA ACCAGGAAGC
    AATAGAGTTG TCTGGAGGTA GATGACAAGG GCCGTGACAA CAGACATCAA
    ACAAACGGCG TAAGCCGAAT CTGTACTTTT TCTGTAATGG ATGTAGCGTT
    GTTCTTTGTA GAGTAGATAG AATTGTCCTG GAACAACAGC GTAAGCGATA
    GCTGGTAAAT GATACAATCG GATGGATAAT GATATGATAG AAAAATAAAG
    TTGTATGTGT TTGGTTGGGC ATGGCTGAAC CTTAGCAGTT GTGTGCTCCC
    CATGCACTGT TATCAAATCG GCCGATTAGT CGTAAAGTCG GTCAAATTAG
    TTGACTAAGA GCCATGACTC TGACCAAATT AGTCGTAAAG TCGGTTGTAA
    ATTAGTCGTG ATTATTGTAG CAAATCACCA ATTCACCGTG CTAATTGGCT
    TATTGTGTTT AGTACTTT

    Gene models with high sequence identity

    1. AT5G10290.1 [+] show detail - leucine-rich repeat transmembrane protein kinase family protein
      E-value: 0; Score: 796.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 34.93
    HMMSmart Serine/threonine-protein kinase domain 2.8e-28
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.1e-27
    HMMPfam Serine/threonine-protein kinase-like domain 1.8e-41
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.6e-09
    HMMPfam Leucine-rich repeat 0.51
    HMMPfam Leucine-rich repeat 0.85
    HMMPanther PROTEIN SERINE/THREONINE KINASE-LIKE PROTEIN 1.4e-287
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.4e-287
    superfamily Protein kinase-like domain 2.3e-77
    superfamily L domain-like 3.6e-36
    Gene3D no description 5.1e-37
    Gene3D no description 1.3e-23
    Gene3D no description 1.5e-46
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G10290.1

    Model type
    Protein coding
    Short Description
    leucine-rich repeat transmembrane protein kinase family protein
    Computational Description
    leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G65240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR