K10012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10012

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10012

Determination of introduced cDNA(s)

  • J013111G10 - Rice Full-length cDNAs - Original: J013111G10

    full reading [+] show sequence

    Nucleotide sequence: J013111G10 - full reading 
    GGGTACTCTT TGCCCTCGAT CGAAGCTACC ACCCATCCCA CCTTGCCCTT 
    CCTTCGCCGC CGATTCCGAT CTGGGCCGCC GGCGACGGCG AAACACAGGC 
    AAAGCAAAGA TAAAGGTACA ACTGTTGTTT GGTGCTTGTC CAGCTAGGAC 
    AGCCGAGTGA AGTGCCAGCA TGGGTGGCAT CCTTGGACGC CATGACACCA 
    TGAAGAGGAG CTCTCACGGC TCGAAGCTCG AGACGAAGAT GGTGGAGTCC 
    ATGCAGCAGA GAGCGTCGCA CGGGACTTCA CTCAAGTCGT TCGATAGCAT 
    CATCATGAAG TTTCCGAAAA TCGATGAGAG CTTGAGGAAA TGCAAGATCA 
    TCTTCGAGCA ATTCGATGAA GATTCCAATG GCGAAATAGA TAAACAAGAA 
    TTGAAGCATT GTTTCCAAAA GTTGGAAATT TCATTCACAG AGGAGGAGAT 
    AAATGACCTC TTTGAAGCTT GTGATATAAA TGAAGACATG GGCATGAAGT 
    TCAATGAGTT CATCGTCTTT CTGTGCCTCA TTTATCTGCT CAACGAACCA 
    ACTGTGTCAG AAGCAAAGAT TAAGATGGGA TTAGGAAATC TTGAGGCAAC 
    TTTTGAGACC TTGGTTGATG CATTTGTTTT TTTGGATAAG AACAAAGATG 
    GATATGTCAG TAAGGAAGAG ATGGTTCAAT CAATGAATGA GACTGCAACA 
    GGGGAACGCT CTTCTGGGCG TATAGCCATG AAAAGATTTG AGGAAATGGA 
    CTGGGACAAG AATGGAATGG TGACCTTCAA AGAATTTCTG TTTGCATTCA 
    CTCGCTGGGT TGGGATTGAC GAAAATGAGG ACGACAATGA ATGAATTTCG 
    TGAAGATAAG TTGTTCAATT ATTAGGACCT GGCCAGCCTA AGGAGGTTAT 
    AAAGTTTGGT GGTAATGACA ACTGGAGCAT ATGATGTTGA TTAGTTGATC 
    GTTGATATTG TGTATTATCT TATAGGATGA TTCAACATGA TCCTAGTAGA 
    ATATCTTAAC ATGCCTGAAG ACTCCATGTA TGCTTACAAA TTTAAAGAGT 
    TCCATGACAG ATAGATCTGA ACTTGTACAG TAATTCTAAT GGTTGTACTT 
    ACCAATATCC TGGACTTGAT GTGGAGAAAT GCTATAATTC AGTTGCATGC 
    TCAACG

    Gene models with high sequence identity

    1. AT4G26470.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 4e-80; Score: 295.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan EF-HAND 2 13.286
    ProfileScan EF-HAND 2 8.042
    ProfileScan EF-HAND 2 11.389
    ProfileScan EF-HAND 2 10.273
    HMMPanther UNCHARACTERIZED 3.6e-71
    HMMPanther CALMODULIN 3.6e-71
    HMMPfam EF-hand 3.7e-06
    superfamily EF-hand 3.4e-30
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    Gene3D EF-hand-like domain 1.9e-23
    HMMSmart Calcium-binding EF-hand 0.0032
    HMMSmart Calcium-binding EF-hand 26
    HMMSmart Calcium-binding EF-hand 0.041
    HMMSmart Calcium-binding EF-hand 2.8

    See the detailed result >

    AT4G26470.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G24110.1); Has 9300 Blast hits to 7546 proteins in 1004 species: Archae - 0; Bacteria - 25; Metazoa - 3748; Fungi - 1101; Plants - 3090; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR