K09606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09606

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09606

Determination of introduced cDNA(s)

  • J023131F07 - Rice Full-length cDNAs - Original: J023131F07

    full reading [+] show sequence

    Nucleotide sequence: J023131F07 - full reading 
    GGTGGTGGTA GCGGCACGCT TCTCGCTACG CTATAGAAAC CGCCTCTCGA 
    GTAGTCGAGT CTCGAAGCAC AAATTCCCCT CGAGCCGAGA CGCCTCCTTG 
    CTCCCCTCTA AACCCTCCCC CTCGCGCGGA TTCGCTTCCC CGTGTCTCCC 
    AGAGGGGAGT TGGTGGTGTT CCTGGAGCTT CTTGGGGGTG GTTTTTCCAA 
    GCTGCGGCGG GCTCGCCGGA GTTGGATCCG GCGGAAGAGA GGATTTCTGG 
    GAAGGGTGCC GCGAAGCTGC TCGACGGCAG GCTCGTGGTG GCCTTGAGGA 
    AATCGCTTCA ATTTCGAACG GGCTGTTCAG TTGGCTGGAC GATTCATTTC 
    AAGAGCAGAA GTGTTTACAC CAAGCCGTAG CAGAAGAGGG AATCCTTGAT 
    TTGTCGTGGG AATAAAGAGG TGCTCACCTT TGAGTTGGAC AATGCATCCC 
    AGGGCTCGAA TCCACGCAGA CCCGGCTCCG GAGTTCGACC AATTCGACTG 
    CCTGCCGGAT CCAGTTGTCC TCCTGATTCT GAACAAGCTG GAGGACGTGC 
    GTTCGCTTGG CCGCTGCGCT GCCGTGTCGA AGCGGTTCAG CGGACTTGTT 
    CCTCTGGTTT CCGATGTGTA TGTCAAGATT GACCGTGTCG TGGCCACAGA 
    TGGTGATGCT GATGATGCTC TCAACCTGTC TTCGGCGAAG CCAAAGAACA 
    TCTTCTCCCA TTTCTTTAAG CTTATGCTAT TCACAATCGT CAAGCCATTC 
    CACAGTATGC GCAACCTGAA TGGCACGGGC AGGCCGTTGT TCCCGCTTGC 
    GCAGCATTCA CCGGTACATG TGCTTAGGAA TTTCTCTGAT GTCTGGAATC 
    TCCGGGTGGA GCTTCCCTCG GGAGATGTTG GGACCGAGGA GGGTGTTCTG 
    CTTAAGTGGA GGGCTGAGTA TGGTAGCACA CTTCGGAATT GTGTGATTCT 
    GGGAGGTACC CTGGTCGATC GCAAGCCTAT AGGCGCAGAG CATGAGTCGT 
    CGGTAGAGGA TAATGGAAGC ATGCCAGAAT CTTTCTATAC CAATGGCGGG 
    CTTAAACTTC GTGTCGTGTG GACTATCAGC TCTTTGATTG CTGCATCAAC 
    AAGACACTAT CTTCTCCGGT CAATTATCAA GGACCATCCG ACGTTGAGGA 
    GCTTGGTTTT AGCAGATGCC GATGGGCAAG GGACATTGTA CATGGGGATG 
    GAGCAGCTTA GAGAGTTTAG AGAAAACAAA CTGTCAGCCT CAGCATGTTC 
    CAATAGAACT CAGGTCCCAG CCTGCAACAT GAAGCTGAAA TATGCCCCAT 
    ACCTTGAGCT ACCTGGTGGC ATGACATTGC AAGGTGCCAC CCTGGTTGTG 
    ATCAAACCCT CCAATGATGG AGGCAGTGGT GGTCACAGCA GTCGGAAGGA 
    AACTGAAGCT TTTGTTTCAA GTGCATTCGA TGAACCTTTC AGATTTGCTG 
    TGAAGGCGCT GATGAAGAGA CGAACATATC TACTGGAGAT GAACGGTTTC 
    TAGATAGTCT ACTTGAGTTG CAGTGGATTG TCTTTCTATC AACTGCTTCA 
    AATATATCAT TTTTGTTTTT TTCTCTCAAG CAGAGCAACT TCAATCCTGT 
    TTAGAATGAT GAAATGTCCA CCGCAATGCA ACCCCATTTT CTGTTGTTTG 
    CTCTTTGTAT AGCAATACTA CTAGCATCCT AAATTTCCAT TTGAGTTTCG 
    AATTTCCAAA TTACCAATTT CCAATCAATG TTTCTATAGT TCCTATTATT 
    TCATTTCC

    Gene models with high sequence identity

    1. AT4G18380.2 [+] show detail - F-box family protein
      E-value: 6e-91; Score: 332.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G18380.2

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G46170.1).
    Link
    InterPro Scan - TAIR