K08619

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08619

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08619

Determination of introduced cDNA(s)

  • J033111J19 - Rice Full-length cDNAs - Original: J033111J19

    full reading [+] show sequence

    Nucleotide sequence: J033111J19 - full reading 
    GACCAAAAAT CATCCCCAAT CTTACATCAA CTACCTACTT CCTACGTAGC 
    CCAGTAACTA TACATTATTA AGGCTAACCA GTAACTAACT AAGGCACACG 
    TACGCAATGG TGGCGCTCGG ACGCCGTTCA TGGCTGGTCC CGCTGGCCAT 
    GGTGCTCGCC GTCTCCAGCT GCCTCGCCGG CCCGGCGATG GCCGCCGGAA 
    AGACCGGGCA GATGACCGTG TTCTGGGGCC GTAACAAGAA CGAGGGAACC 
    CTCAAGGAGA CCTGCGACAC CGGCCTCTAC ACCACCGTCG TCATCTCCTT 
    CTACAGCGTG TTCGGCCACG GCCGCTACTG GGGCGACCTC TCCGGCCACG 
    ACCTCCGCGT CATCGGCGCC GACATCAAGC ACTGCCAGTC CAAGAACATC 
    TTCGTCTTCC TCTCCATCGG CGGCGCCGGC AAGGACTACT CCCTCCCGAC 
    CTCCAAGTCC GCCGCCGACG TCGCCGACAA CATCTGGAAC GCCCACATGG 
    ACGGCCGCCG CCCCGGCGTG TTCCGCCCCT TCGGCGACGC CGCCGTCGAC 
    GGCATCGACT TCTTCATCGA CCAGGGCGCG CCCGACCACT ACGACGACCT 
    CGCCCGCAAC CTCTACGCCT ACAACAAGAT GTACCGCGCC CGGACGCCGG 
    TGAGGTTGAC GGCGACGGTG CGCTGCGCGT TCCCGGACCC GAGGATGAAG 
    AAGGCGCTGG ACACCAAGCT GTTCGAGCGC ATCCACGTCC GCTTCTACGA 
    CGACGCCACC TGCTCCTACA ACCACGCGGG GCTCGCCGGC GTCATGGCGC 
    AGTGGAACAA GTGGACGGCG AGGTACCCCG GCAGCCACGT CTACCTGGGC 
    CTCGCGGCGG CGAACGTGCC GGGGAAGAAC GACAACGTGT TCATCAAGCA 
    GCTCTACTAC GATCTGCTTC CCAATGTGCA GAAGGCGAAG AACTATGGCG 
    GAATCATGCT CTGGGACAGG TTCTACGACA AGCAGACCGG TTACGGCAAA 
    ACCGTCAAGT ACTGGGCTTA ATTAATTAAC CTACTACTAC TATTTACTGC 
    TACTATGCGT TAATTTGTGC GTGTGTGTTT GAGAATAAAA TATGTTGGTG 
    TGTGTTGGTT TTTTTATGTA GGTATATGAA TAAAACGAGA TCCATATGTA 
    ACGATGGAGA TCTCGAGTTG TTTGTT

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 4e-51; Score: 199.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.6e-93
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 1.3e-13
    FPrintScan PRICHEXTENSN 2.5e-10
    FPrintScan PRICHEXTENSN 2.5e-10
    FPrintScan PRICHEXTENSN 2.5e-10
    FPrintScan PRICHEXTENSN 2.5e-10
    superfamily Glycoside hydrolase, catalytic core 1.4e-75

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR