K08615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08615

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08615

Determination of introduced cDNA(s)

  • J033078P03 - Rice Full-length cDNAs - Original: J033078P03

    full reading [+] show sequence

    Nucleotide sequence: J033078P03 - full reading 
    AAGTGCTGCT GCTGCAAAGG AAAAGAAGAA GCTGGAAAGG AAACTGGAGA 
    AGGACCTCGA GAATGAGAAT GGAGGTGCTG GGGTCTATTC TGCTAGTCTC 
    AAGAAGCATT ACTTATTGGC TGATGATGAA TGGAAGGAAG ATATTCTGCC 
    TGAGATATTG GATGGGCATA ATGTTGCCGA TTTTCTGGAT CCAGATATAC 
    TGCAGAGGTG TGAAGAGTTG GAGAGAGAGG AGGGTCTTCG CCTCGAAGAG 
    GAAGCTGCAC AGGAAGCTTT CCAGATTGAT GGCCATGAAC TAACTGAAGA 
    GCAGCGTGAA ATCTTGGGTC AGATTAGAAA GAAGAAGGCA TTGCTCATCC 
    AAGAGCATAG AATGAAGAAG AGGACTGCAG AAAGCCGTCC TATTGTTCCT 
    AGAAAGTTTG ACAAAGACAG GACATTCACA ACTAATAGAA TGGGTCGTCA 
    ACTTTCATCC ATGGGTTTTG ATCCTAGGGC AGCTCTGGAC CGAGCCCGCA 
    GCCGTTCTAG AGGTCGCAAG CGTGAGAGGT CACTTAGCAG AGCTGCTAGT 
    GATGGTGATG ATATGGATAT AGATGGCCAG CAATCCAGCA AGAAATTGCG 
    CGCGTTGTCG AGGTCCAGGT CTAGGTCAAA ATCAAGACCA CCTGAGGAGG 
    TTGTTCCAGG AGAAGGATTC AAGGACTCTG CTCAGAAGAA GAAGGCGATT 
    AAGAAAGCTA AGGATTCTGT GAGGAACAGG AACAAGGAGG CTCGTCGCGG 
    TGAGGCGGAT CGTGTCATTC CAACTTTGAA ACCAAAGCAT CTATTCTCTG 
    GAAAACGTTC TATTGGCAAG ACGAGCAGGC GATAAGTAAT TCAGCACTGC 
    TGCTTAGCAT CACTGGTTTC AGGAAGAGCA GTATAATTGC AGTTCGGTGT 
    TGGGATTAGG GTGAAGGAAG GCCTGTTTAT CCAATCTTTA GGACTTGTTC 
    TACGCCGTTA TTCATACTGT CTGGTGGATT GGTGTTGTAT CGCGTCTCAT 
    CCTTCGACTG AGACATAATT TTGTTAGCTT ATGTTTCAGC TTTATGCTAC 
    ATTATATATG GTTTGGCTAG TATTAATAGA GTGGTTTAAT TTCGTCGAAT 
    GGTACTCACT ACCATCAATA TCTTATAATT GTGACTTTGT TATACTTATA 
    TTCCAGTCCT GTTCTACTGT ACCGATGCTC T

    Gene models with high sequence identity

    1. AT1G50920.1 [+] show detail - Nucleolar GTP-binding protein
      E-value: 6e-55; Score: 211.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NOG, C-terminal 1.5e-26
    HMMPanther PTHR11702 1e-38
    HMMPanther PTHR11702:SF4 1e-38

    See the detailed result >

    AT1G50920.1

    Model type
    Protein coding
    Short Description
    Nucleolar GTP-binding protein
    Computational Description
    Nucleolar GTP-binding protein; FUNCTIONS IN: GTP binding, nucleotide binding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), NOG, C-terminal (InterPro:IPR012973); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 9379 Blast hits to 9179 proteins in 2035 species: Archae - 370; Bacteria - 5195; Metazoa - 1143; Fungi - 469; Plants - 325; Viruses - 0; Other Eukaryotes - 1877 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR