K07638

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07638

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07638

Determination of introduced cDNA(s)

  • J033114E21 - Rice Full-length cDNAs - Original: J033114E21

    full reading [+] show sequence

    Nucleotide sequence: J033114E21 - full reading 
    GTGCTATACG CATCTTCCCT AGCTTGCTAA GCTAGCTAGT CTTCTCCTTC 
    CTTTCTCCTC TTCCTCCTCC TCCTCTTCTT CTCAATCTTG CTCAGCAAAT 
    CTTGTCGGGG AGAGAGAGAG AGAGATCAGC AAGGAGAAGA GGGAATTAAG 
    CTAGATCGAG GTAGTCGTCG ATCGATCGAT TGAAGATGGG GAGAGGGAAG 
    ATTGCCATCA AGAGGATCGA CAACACGATG AACCGGCAGG TGACCTTCTC 
    GAAGCGGCGC GGCGGGCTGA TGAAGAAGGC CCGGGAGCTG GCCATCCTCT 
    GCGACGCCGA CGTCGGCCTC ATTGTCTTCT CCTGCACCGG CCGCCTCTAC 
    GACTTCTCCA GCTCAAGCAT GAAATCAATA ATAGAGCGGT ACCAGGAGGC 
    AGGAGAGGAG CATTGTCGGT TGCTGAACCC AATGTCAGAG GCTAAGTTTT 
    GGCAGCGGGA GGTTACAACT TTGAGGCAGC AAGTGCAAAA CTTACACCAC 
    AACAACAGGC AACTTTTGGG AGAGGAAATC TCCAACTTCA CAGTTAGAGA 
    TCTGCAGCTT CTCCAGAACC AAGTTGAGAT GAGCCTACAT TCCATAAGAA 
    ATAAAAAGGA TCAACTTTTG GCAGAGGAGA TTCTAAAACT CAATGAAAAG 
    GGGTCTCTTG TTCAAAAGGA GAACAGTGAA CTTCGCAAGA AGTTCAACAT 
    TGCTCATCAA CGCAACATAG AATTACACAA GAAGCTTAAC TCTGGAGAAA 
    GCACGTCAAG TGAGCAAGTT ACCAGAAGCT CAAAGGATCC CGGAGAATCG 
    AGTACACCCC GTGATTCACG TGTGTGTATT GACCTTGAAT TGAGTCAAAA 
    AGAAGTTGAA GATGAATAAC ACATGATCAA GTGTTAAAAA CAACATGATG 
    GCCAGTAACT TTTGCAGCAT CACGCCTACT ACAAGCGCAA GAAAAGCTAG 
    CTACTACTGG AACAAGGGAT CTTAATCATG TTTTGAAACT TAATTAGTAA 
    TATTTTAAAA AATCGTACTA TACTAATCAT GATGTGTAGC GTATTGCACC 
    ACTGAATTTA TTACTGTAAT TAACATGGTG AGTGTTAAAA TATTTTGTGA 
    TATC

    Gene models with high sequence identity

    1. AT3G57230.1 [+] show detail - AGAMOUS-like 16
      E-value: 6e-62; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Transcription factor, MADS-box 30.852
    ProfileScan Transcription factor, K-box 14.371
    HMMSmart Transcription factor, MADS-box 4.9e-37
    superfamily Transcription factor, MADS-box 7.7e-31
    HMMPfam Transcription factor, MADS-box 9.3e-24
    HMMPfam Transcription factor, K-box 1.3e-20
    PatternScan Transcription factor, MADS-box 0
    Coil coiled-coil 0
    HMMPanther MADS BOX PROTEIN 2.4e-60
    HMMPanther MADS BOX PROTEIN 2.4e-60
    FPrintScan Transcription factor, MADS-box 3.5e-27
    FPrintScan Transcription factor, MADS-box 3.5e-27
    FPrintScan Transcription factor, MADS-box 3.5e-27

    See the detailed result >

    AT3G57230.1

    Model type
    Protein coding
    Short Description
    AGAMOUS-like 16
    Curator Summary
    MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.
    Computational Description
    AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7328 Blast hits to 7327 proteins in 923 species: Archae - 0; Bacteria - 10; Metazoa - 652; Fungi - 320; Plants - 6229; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR