K07025

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07025

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07025

Determination of introduced cDNA(s)

  • J033120F09 - Rice Full-length cDNAs - Original: J033120F09

    full reading [+] show sequence

    Nucleotide sequence: J033120F09 - full reading 
    GGTATCCCAT CAACTTGCAA CTCTTCATTC CAGTTCGCTT CCTCCCTCCC 
    ACCTCTTCTC CACTTCTTCT TCCTCCTCCC CTTTCACACT CCACTTCTTT 
    GGTCTGCTCT TCTTGGTATC CTTCTCCTAC GCATAGTTAA GCTCCGAGCT 
    CAGGAGGTAG GTTGGTAGGT TTCTATTGCT TCTTCTCAGC TGGGAGAGTG 
    AAAATACCGA GGAGAAAAGG CACATCAAGA TTGTTTCTTT CGGTTTCTTG 
    GGCTTCTCTT GCGGCAACAT GAAGAAGCTC TTCTTCTTCC TCTTCCTGCT 
    GATACTGGCC GCCTCGGTTG TTCACGGCGA GGACGGGGCG TACATCGGCG 
    TCAACATTGG CACGGCCATG ACGTCGGTAC CGGCGCCGAC ACAGATCACG 
    ACGCTGCTCC GCTCGCAGAA CATCCGCCAC GTGCGGCTGT ACGACGCCGA 
    CCCGGCGATG CTCGCGGCGC TCGCCAACAC CGGCATCCGC GTCATCGTCT 
    CCGTGCCGAA CGAGCAGCTC CTCGCCATCG GCAACTCCAA CGCCACGGCG 
    GCCAACTGGG TGGCGCGCAA CGTGGCCGCG CACTACCCTT CCGTGAACAT 
    CACGGCCATC GCGGTCGGCT CCGAGGTGCT CTCCACGCTG CCCAACGCGG 
    CGCCGCTCCT CATGCCGGCC ATCCGCTACC TCCAGAACGC GCTGGTGGCC 
    GCGGCGCTCG ACCGGTACAT CAAGATCTCG ACGCCGCACT CCTCGTCCAT 
    CATCCTCGAC TCGTTCCCGC CGTCGCAGGC CTTCTTCAAC CGCTCCCTGG 
    ACCCGGTGCT GGTGCCGCTG CTCAAGTTCT TGCAGTCCAC GGGCTCGCCG 
    CTGATGCTCA ACGTGTACCC GTACTACGAC TACATGCGCT CCAACGGCGT 
    CATCCCGCTG GACTACGCGC TGTTCCGGCC GCTGCCGCCG AACAAGGAGG 
    CGGTGGACGC CAACACCCTG CTGCACTACA CCAACGTGTT CGACGCGGTC 
    GTGGACGCTG CCTACTTCGC CATGGCGTAC CTCAACGTCA CCAACGTGCC 
    GGTGATGGTG ACGGAGACCG GGTGGCCGCA CAAGGGCGAC CCGTCCAACG 
    AGCCCGACGC CACCTCCGAC AACGCCGACA CCTACAACAG TAACCTCATC 
    CGGCACGTGA TGAACACCAC GGGCACGCCG AAGCACCCCG GCGTCGCCGT 
    GCCGACGTAC ATCTACGAGC TCTACGACGA GGACACCCGC CCCGGCTCGA 
    CGTCGGAGAA GTACTGGGGC CTGTTCGACA TGAACGGCAT CCCGGCGTAC 
    ACCCTGCACC TGACAGGCTC CGGCGTGCTG CTCGCCAACG ACACGACGAA 
    CCAGACCTAC TGCGTGGCGC GGGAGGGCGC TGACGAGAAG ATGCTGCAGG 
    CGGCGCTCGA CTGGGCTTGC GGCCCGGGCA AGGTGGACTG CTCCGCGCTG 
    ATGCAGGGGC AGCCGTGCTA CGACCCGGAC AACGTCGAGG CGCACGCCAC 
    CTACGCCTTC AACGCCTACT ACCATGGCAT GGGCATGGGC TCCGGGACGT 
    GCTACTTCAG CGGTGTCGCC GTGATCACCA CCACCGATCC CAGCCACGGG 
    TCTTGCGTTT ACGCTGGAAG TGGTGGGAAG AACGGGACGT CGTTGCTGAA 
    CGGCACATCG CTGGCGCCGT CGTCGAACTC CACGGCGGGG GACTCCGGCG 
    CGCACCGGGC GATCGGGGAC GTCTCGTCGT TCGTCCGCGC CGTCGTCGCG 
    GCGCTGCTGT TGAGCGTCGT CCTCCTGTTG TAGGCAGTGA GACGAGAGTG 
    GTTAGTTTAG TAGGCAAGGC AGCAGAGTCC GTAGGAATTC ATGGGGGGAT 
    TCTTTTTTTG GTGTCGAGTG GGATTGGCCT CGGTGTTATG GGTGGGTGGT 
    GATCATTGAG AACGAACAAG ATGATGTGCC TGTGTTCATC TGTTGCTCTA 
    AGATGTTGTC TGGGAACTTG GTATTGGGTG GTACGTTGCC TGGAAAAGGA 
    AATTGGTACT AGGTTGTATT TGCAGAAGGT GTCAGTGTTT GTGCGCTGAC 
    CACAATCAAA ATCTTCTTCT GAGCC

    Gene models with high sequence identity

    1. AT2G01630.1 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 0; Score: 645.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart X8 4.6e-49
    Gene3D Glycoside hydrolase, subgroup, catalytic core 2.5e-106
    superfamily Glycoside hydrolase, catalytic core 4.9e-99
    HMMPfam Glycoside hydrolase, family 17 5.9e-86
    HMMPfam X8 4.1e-29
    Coil coiled-coil 0

    See the detailed result >

    AT2G01630.1

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT1G66250.1); Has 2926 Blast hits to 2856 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 93; Plants - 2819; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR