K07007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07007

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07007

Determination of introduced cDNA(s)

  • J033138N02 - Rice Full-length cDNAs - Original: J033138N02

    full reading [+] show sequence

    Nucleotide sequence: J033138N02 - full reading 
    GTGGGCCACA GCCGCTGACA ACGCGGGCCC ACACGATCCC CCCTCTCCCC 
    TGTCTTAAAC CCCACACAAA CACGACCCAA CGCCTTCCTC TCCTCCTCTC 
    TCTCTCCCCC GCTCCTCGCG CCGCCGACAT CGCCGGAGAA AATGAGTCAA 
    CAAGGGGAGT ACCACGCCGA CATGATGGCG GAGTTCCTGC GGGGGAGCGG 
    CGGCGCGGCC GTGATTGACG GCGGGCTGGC GACGGAGCTG GAGGCTAACG 
    GCGCCGACCT CAAGGACGCC CTCTGGAGCG CCCGGTGCCT CTTCACCTGC 
    CCCGACCTCA TCCGGAAGGT TCATTTGGAC TATCTTGAAG CTGGGGCAAG 
    TGTTCTGATA ACAGGATCAT ATCAGGCCAC AATTCAGGGC TTCCTTTCAA 
    AGGGATTTTC TCAGGAGGAA AGTGAATCAT TCCTGAGGAG GAGTGTTGAA 
    CTAGCATGTG AAGCACGGGC TATTTACCTG GAAAAATGTT CTAACGGTTC 
    GGACGAAGCC AAAGACGTAA CAAAATACAG GAAGCGCCCA ATACTAATTG 
    CGGCATCAGT TGGTTCTTAT GGAGCATACC TAGCAGATGG CTCTGAGTAT 
    AGTGGTGACT ACGGTAATGA GGGCACTTTG GAGTTCCTCA AAAACTTTCA 
    TCTGAGAAGG CTTCAAGTCC TTGCTGAAGC TGGTCCTGAT GTTATTGTTT 
    TTGAAACTAT TCCAAACAAA ATTGAGACTC AGGCATATGT TGAACTACTA 
    GAGGAGTGTA AATTACGTAT TCCGGCATGG TTTGGTTTCA CTTCAAAGGA 
    TGGAGTCAAT GTAGTAAGTG GTGATTCCCT GATAGAGTGT GCCTCTATTG 
    CCGATTCATG CAAGGAAGTT GCTGCAGTTG GTATTAATTG CACTCCCCCA 
    AGATTTATCC ATGAATTAGT TTTATCCATC CGGAAGGTGA CAAGTAAACC 
    AATATTAATA TACCCAAATA GTGGTGAGAG CTATGATCCT ATAAGAAAGG 
    AATGGGTGGA ATGCTCAGGG ATTTCAAATG AGGATTTTGT TTCATATGTC 
    AAAAAATGGC ATGAGGCTGG GGCCTCACTG ATAGGGGGTT GCTGCAGAAC 
    AAGTCCAGAT ACGATAAGAG GAATATCGAA GGCTCTGCAT GGAGTTTAGT 
    TGATGGAGAT TGAGTAGAGT TGATAGCCAG TTTTTGGACA GAGTCGCTAA 
    CTCACTCTGT TTGCCCGATG TGACACAGGT CTTATTGGTC AGGTAGTCAG 
    ATTTCTTATG GAATTTGAAT AGCTATTGAG GACAATGATT TAGGAAAAAA 
    AAAAAACTAA TGCTGTGTTG TTCTTTCATT AGCTTGTACC AGCACCTTTA 
    TTGATGAGGA AATGATGCCA AATGTTGGCC T

    Gene models with high sequence identity

    1. AT3G63250.1 [+] show detail - homocysteine methyltransferase 2
      E-value: 4e-125; Score: 445.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homocysteine S-methyltransferase 44.954
    Gene3D Homocysteine S-methyltransferase 1.7e-76
    superfamily Homocysteine S-methyltransferase 2.2e-82
    HMMPfam Homocysteine S-methyltransferase 2.8e-83
    HMMPanther HOMOCYSTEINE S-METHYLTRANSFERASE 5e-41
    HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 5e-41

    See the detailed result >

    AT3G63250.1

    Model type
    Protein coding
    Short Description
    homocysteine methyltransferase 2
    Curator Summary
    Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
    Computational Description
    homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR