K06938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06938

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06938

Determination of introduced cDNA(s)

J033050M21 - Rice Full-length cDNAs - Original: J033050M21

full reading [+] show sequence

GATCTGGTAG CTTCTTCTCG CGGCTGCGCG ATGGAGAGCT GGGTCCGCGC 
GGTGGTGGAG GCTATCCACT CATCTCGCGC CCAGGCCGTC ATCTACCTCG 
CCGGCGGCGC CTCGCAGGCG CTCGGGTGGC TGCTGTCCGT GCCCGGCGCG 
TCCGGCACCG TCCTCGAGGT CGTCGTGCCC TACTCCATGG CCTCCATGGC 
GCAGCTGCTC GGCAAGATGC CCTTGCAGTT CACCAGCAAG CAGGCCGCAG 
AGGACATGGC ATTGGCCGCG TTCAACCGCG CCCTCAAGCT TTCTGGACCA 
GGTCTACAAG TAATGGGTGT TGGCTTCACT GGGTCACTGG CTAGCTCACG 
TCCAAAACAT GGGTTTACGG AGCAGAGAGG AAGAAGATAA AGTTTCAAGC 
TACTTTCTGC TCAAGGCAAT TGCAGACGGC TGCAAAGTTC CTGCAACCAT 
TCAGTCAGAT GTTCAAGAAC CTGAACTTCC AAAAGAAAGC GTGGAACAAT 
TTGATGAAGA CCAAGAACTC CAGCAAGTTA TTGATGGGCA AGTCTGCATG 
AAAGTGTATC ACTTTTCTGA TTCAATGGAT AAAAACTTCA ACAGGAAAAT 
AATTCTACCT GGTTCATTCA ATCCCCTGCA TGATGGACAC CTTAGGCTAT 
TAGAAGTTGC ATCAAGCATG TGTGATGATG GTCTTCCATG CTTTGAGATA 
TCAGCAATCA ATGCCGACAA ACCTCCACTA TCTATCGCAG AAATCAAGCG 
CCGGGTTGAG CAATTTAGAA AAGTAGGGAA GAATGTGATA ATATCTAACC 
AACCATACTT TTACAAGAAA GCGGAGCTAT TTCCAGGCAG TGCATTTGTA 
ATCGGTGCAG ACACTGCAGC TAGGCTTGTT AATCCTAAGT ATTATGGAGG 
TGATTACAAT AGAATGCTAG AGATACTTCT CGAATGTAAA AACACAGGTA 
CAACATTTCT TGTTGGTGGT CGAAATATTG AAGGAGTTTT CAAGGTCCTT 
GAAGATTTGG ACATTCCAGT CGAGTTAAGG GAAATGTTTA TCTCTATACC 
AGAGGAGAAG TTTCGCATGG ATATTTCATC TACAGATATA AGAAAAAAAC 
AAGGGCCTTG ATGTATCAAA CATGCTGTTC TTCTTATATA CTCCCCCCGT 
CACCCCGTCC TAAAATATAG CAACATGTCT AATCGATTAC TAAGTTGCTA 
TATTTTGGAA CAGGGGGAAT AGTAGATTCA AAATAAAAAA ATTGGTGGTT 
CAAATTATTG GATGAACTTC GTGAACCGTC ATGGCAGTGT GTCATGCCAT 
AGGTTTTGGC CCTACGAATA ACAACTTCTT TTCTGTATCT TAGTAAAACA 
ACAGTGGTTG GAGATGTAAA AAACCTACTT CCCTGTTTAT CTTTCTCTTT 
TCTTGGATGA TTAGGCAATT ATGCCCAGTT GTCCTTTATA CTATTCTTTT 
TTTGTTTGGA TGCTTTTCAC ATGTACCTGT ACAGGCTCCA CAATGTCACA 
TTATCAGTTG AAAAAAGGAC ACCGCTGAAT TCTTGATAGT GACATACTCA 
CATGCTTTG

Gene models with high sequence identity

AT2G01220.1 [+] show detail - Nucleotidylyl transferase superfamily protein
E-value: 2e-133; Score: 147.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Nucleotidylyl transferase	6.5e-21
HMMPfam	Cytidylyltransferase	2e-09
HMMTigr	Cytidyltransferase-related	1.1e-06

See the detailed result >

AT2G01220.1

Model type: Protein coding
Short Description: Nucleotidylyl transferase superfamily protein
Computational Description: Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.2); Has 432 Blast hits to 425 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 78; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link: InterPro Scan - TAIR