K06841

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06841

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06841

Determination of introduced cDNA(s)

  • J023007G07 - Rice Full-length cDNAs - Original: J023007G07

    full reading [+] show sequence

    Nucleotide sequence: J023007G07 - full reading 
    GATCCATTCC CCGCAAGTCT CCCTCTCGCA CCACAACAAA CGCGCCTCCT 
    CCATCTCGAA CTCTCCAGTC TCCACCACCC CCGTCCCCGT CTCTCGATCG 
    CCATGGCCTC CGCCCTCGCC GCCTCCACCG CCGTCTGCTC CTCTCCCCTC 
    GCATCCGCCT CCGCCTCCGC TTCGTCCGCG CGCCGCCTGC GCGCGGTCCC 
    GCCCTCCCGC GGCATCCGCT ACCAGGCCCT CCGCGCGGAC TCCGGTTTCG 
    CCGGGAACCG CCGGGGTGGC GGCCGTGGAG CGTCGGTAGT GTGCGCGGTC 
    CAGGGCCAGG ACACATCCAT CCAAGTTCCA GAAGTGACGA AGTCAACATG 
    GCAATCACTT GTTATGGAGA GCGAGCTTCC TGTCCTTGTT GGATACTGGG 
    CTACATGGTG TGGGCCTTGC AAAATGATTG ATCCCGTTGT TGGCAAGCTC 
    TCCAAGGAGT ATGAAGGGAA ACTGAAATGC TACAAGCTCA ATACTGACGA 
    GAATCCAGAT ATAGCAAGTC AGTATGGCGT CCGGAGCATC CCAACCATGA 
    TGATATTCAA GAACGGAGAG AAGAAAGATG CAGTGATTGG AGCTGTGCCT 
    GAGAGTACAC TGATCGCATC CATTGAGAAA TTTGTCGAGA GGTAAAATGC 
    AAATGCCAAA ACTGAACCCT TTGAACAGTT AGCATTACAC GTCCAACTTT 
    CAGAACTTCA GATCATTCAA GAGTCGAAGC CATGCTCAAT GTTTATATGC 
    CTACGTGTAT AGATAGTATT GGGAATCGCT TTCGGTAGCA TCCAATAAAT 
    GTAATTCGAG GATGCAGGTT GAATGATGAA ATCATGAAAG TCGCAAGGAA 
    GCCTGGTTTC ATGTGTCCAT TCTTTTGGCT GTAGATATGT ATGGTATTGA 
    CTGTTAAGAT ACATATTACC CTTTTACACT ATATTATTGC TTATGATATG 
    TTCCTTCC

    Gene models with high sequence identity

    1. AT1G03680.1 [+] show detail - thioredoxin M-type 1
      E-value: 2e-36; Score: 150.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 12.813
    PatternScan Thioredoxin, conserved site 0
    superfamily Thioredoxin-like fold 4.1e-35
    FPrintScan Thioredoxin-like subdomain 7.1e-08
    FPrintScan Thioredoxin-like subdomain 7.1e-08
    FPrintScan Thioredoxin-like subdomain 7.1e-08
    HMMPanther THIOREDOXIN M(MITOCHONDRIAL)-TYPE 3.7e-41
    HMMPanther Thioredoxin, core 3.7e-41
    Gene3D Thioredoxin fold 2e-32
    HMMTigr Thioredoxin 1e-51
    HMMPfam Thioredoxin domain 3.7e-31

    See the detailed result >

    AT1G03680.1

    Model type
    Protein coding
    Short Description
    thioredoxin M-type 1
    Curator Summary
    encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.
    Computational Description
    thioredoxin M-type 1 (THM1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, response to cold, positive regulation of catalytic activity; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G03520.1); Has 21675 Blast hits to 20380 proteins in 3008 species: Archae - 297; Bacteria - 11532; Metazoa - 2886; Fungi - 1120; Plants - 1860; Viruses - 8; Other Eukaryotes - 3972 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR