K06443

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06443

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06443

Determination of introduced cDNA(s)

  • J023004G24 - Rice Full-length cDNAs - Original: J023004G24

    full reading [+] show sequence

    Nucleotide sequence: J023004G24 - full reading 
    GAGCGATCGA GCGGGGGCGG CTCCTCCTGC GACGGCGAGG CGTCCATGGC 
    GTCCCTCTCC CTTTCCCTCC ACCACCCGTG CAATTCAAGA ACAGGCTTCC 
    TTGGAAAGAG ACAAGGGATT TGTCTTCATG TTATCCCTGC TGGCAGAGTT 
    GGTTTTGTCA GAAAAACAAT TGAGTGCAAG GAATCTAGAA TTGGAAAGAA 
    ACCGATAGAA GTTCCATCAA ATGTTACTCT TACATTAGAG GAGCAATTTA 
    TAAAAGCTAA GGGTCCATTG GGAGAGTTAT CACTAAACTA TCCAGGTGAA 
    GTAAAAGTGG TGAAAGAAGA ATCTGGTAAG CTGAGAGTCT CCAAAACAGT 
    GGAAACCAAA AGGGCAAACC AGATGCATGG ACTTTTCAGG ACCCTGACGG 
    ACAACATCAT CGTAGGGGTA TCAAAAGGGT TTGACAAGAA ACTTCAGTTA 
    GTTGGGGTCG GGTACCGTGC AGCTGTAGAA GGCAAAGATC TCGTGATGAA 
    TTTGGGATTC TCGCATCCTG TTCGGATGGC TGTTCCTGAA GGCCTGAAGG 
    TTAAGGTGGA GGAGAACACC AGGATCATCG TGAGTGGCTA CGACAAGAGT 
    GAGATTGGCC AGTTTGCTGC CTCCATAAAG AAGTGGAGGC CACCTGAGCC 
    GTACAAGGGG AAGGGAATCC GATACGCCGA TGAGGTTGTC AGAAGAAAGG 
    AGGGTAAAGC TGGGAAAAAG AAGTAGAAAA GCTCTTCTGC TTCATCATCG 
    TTTCGTTCGG CTGGTATTAT ATATACTTCC TTTTGGTTTT GATTTTTCCC 
    CATGTGTAAG TGTAATCCAT CTTTTACGAA CAAAGAGAAC AAGCTTTTTG 
    AATCATGTAA TCTCTCACGG CTTGTCG

    Gene models with high sequence identity

    1. AT1G05190.1 [+] show detail - Ribosomal protein L6 family
      E-value: 6e-83; Score: 304.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ribosomal protein L6, bacterial-type 1.5e-32
    FPrintScan Ribosomal protein L6, bacterial-type 1.5e-32
    FPrintScan Ribosomal protein L6, bacterial-type 1.5e-32
    HMMPanther 50S RIBOSOMAL PROTEIN L6 2.7e-85
    HMMPanther Ribosomal protein L6 2.7e-85
    superfamily Ribosomal protein L6, alpha-beta domain 7.2e-33
    superfamily Ribosomal protein L6, alpha-beta domain 1e-18
    HMMTigr Ribosomal protein L6, bacterial-type 5.9e-100
    Gene3D Ribosomal protein L6, alpha-beta domain 5.4e-20
    Gene3D Ribosomal protein L6, alpha-beta domain 1.3e-36
    PatternScan Ribosomal protein L6, conserved site 0
    HMMPfam Ribosomal protein L6, alpha-beta domain 2e-13
    HMMPfam Ribosomal protein L6, alpha-beta domain 1.7e-20

    See the detailed result >

    AT1G05190.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L6 family
    Computational Description
    embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR