K06433

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06433

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K06433

Determination of introduced cDNA(s)

  • J013052J02 - Rice Full-length cDNAs - Original: J013052J02

    full reading [+] show sequence

    Nucleotide sequence: J013052J02 - full reading 
    GGAGCCCGAT TGGCAGTTTG GCACCAGCAC CAGCAGCAGG AGCAGAGACA 
    GGTGAGAGGA GGAGGATAAA CGGAGGAGGC CGCGATGGGA ACCGTGCTGG 
    ACTCCCACTT CCTGGCGCTC ACGGCCATCG TCACTGTGGG ATATCAGCTG 
    GTGTTCTTCA TCATCACCGC GCTCCTGCGG TTCGATAAAG TCACTGATTT 
    CGCAGGAAGT ACGAATTTCA TCATACTTGC AATCCTCACG CTAGCTTTGA 
    AGGGAGCATG GCATTTCCGT CAGGTTGTAT TGACTGTGCT CGTTGTGATT 
    TGGGGTCTTC GCTTAGGACT ATTCTTATTA ATGAGGATTC TTCAATGGGG 
    AGAGGACAAA CGGTTTGATG AAATGCGCGA TAACTTGGGA AAACTAGCAG 
    TTTTCTGGAT TTTCCAGGCT GTTTGGGTAT GGACTGTCAG CTTGCCTGTT 
    ACAATTGTGA ACGCAAGTGA CAGCGATCCC TCAATTGAAG CCCGTGATAT 
    TATTGGTTGG ATCATGTGGC TGATCGGGGC AGGTATGGAA GCAATAGCTG 
    ATCAGCAGAA GCTTACGTTC AAGAATTCTC CGAGCAATCG TGGAAGGTGG 
    TGTAATGTGG GTCTTTGGAG TTATACTCGC CATCCAAATT ACTTTGGCGA 
    GATATTCCTT TGGTGGGGAA TATTTGTAGC ATCTACTCCA GTTCTCTCAG 
    GAGCTGAATG GCTCGTGATC CTCGGACCTG TATTCCTGAC GCTCTTGCTT 
    CTCTTCGTTA GTGGAATCCC ACTTCTGGAG GCTTCTGCTG ATAAGCGCTT 
    TGGACAGAAC GAAGAATACC GCACGTACAA GAACACTACA AGTCCTCTTA 
    TCCCACTACC ACCAGCTGTG TATGGAGCCC TGCCTGGATG GTTCAAGATG 
    GGCTTCCTCT TCGAGCTCCC GCTCTACAAT CGTGTACCGC AACGTGATCC 
    TGTCAGCTGA TGATATCAGT GATCTCTAGC GATTGTTGTG TACAATGTGT 
    GTAGTATAAG ATACTTCCTC CGTTTCACAA TGGAAGTCAT TTTAGCATTT 
    TCCACATTCA TATTGATGTT AATGAATTTA GATAGATATA TGTCTAGATA 
    TATTAACATC AATATGAATA TGAAAAATGC TAGAATGACT TATATTGTAA 
    AACGGAGGGA GGACATTGTT ATTGTCGATA AGTGATTTCT TTTCGCTTTG 
    GTTATTAGGG CAGTGAAATT GTATCCACGT GAAAACATTA CGTTCCCTTC 
    AGCTCTGTTT CT

    Gene models with high sequence identity

    1. AT1G73650.3 [+] show detail - Protein of unknown function (DUF1295)
      E-value: 9e-107; Score: 384.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1295 3.1e-91
    ProfileScan 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal 9.52

    See the detailed result >

    AT1G73650.3

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1295)
    Computational Description
    FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G18180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023083L04 - Rice Full-length cDNAs - Original: J023083L04

    full reading [+] show sequence

    Nucleotide sequence: J023083L04 - full reading 
    GAAAGGAAAA GAGAGAGCCC TCCTCTCCTC TCCTACCCTC TTCTTCCTCC 
    TCCTCCTCCT CGCCTCCCAC CAAACCCTAG CACGAGCAGC CCAATCCATC 
    TCCAGCCTCA CGAGCTCCAG TTCGGAGCAG CCTCGCGGTG GGACGAGTCG 
    CCAGTTGGGG AGCTCGGAGG AGGTGAGGCC GTGGTTGGGG GTTGGGAAGG 
    GGGGAAGGCC AAGAAATGGC GGAGAAGGAG GAGGGCAAGG TGGCGGCGGA 
    GGGTGGGGCG GAGGCGGAGG CCGACGAGGA GGTGGAGGTC AAGTTCCGCC 
    TCTTCGACGG CTCCGACATC GGGCCCCTCC GCTGCAACGC CGTCGCCACC 
    ACCGTCGCCG CCCTCAAGGA CCGCGTCGTC GCCGACTGGC CCAAAGATAA 
    AACAATTGTC CCGAAGACTG CTAATGATGT CAAACTGATA AGTGGAGGAA 
    AAATTCTAGA AAACGACAAG AACATTGCGC AGTGCAGAGC ACCTTTTGGT 
    GATCTTCCGA GCACTGCTAT CACAATGCAC GTTGTTGTGC AGCCATCATC 
    AGCCAAATCA AAACCTGACA AGAAGACCAA CAAGTTGCCA AAGACCACTC 
    GCTGCTCATG TACCATACTA TGAAGGTTCA GTGTCAACTC CATCGACAAT 
    AATTTGTATG TCCGTGAAAA TTATGCAGAG AGACAACGAA TGGAGAGAAG 
    ATTGAAGAAA ATCTGGTGCC AGAGGAGTCC GATGTGTTGT GAGATTGTAT 
    TGTAATTGTA AGCTTAGATA CTACAGAGAG TTCGTCCCTC TGCGGCTAGG 
    GAAAAATAGA TGTCGTTCGG TCGGTTGCTT GTCTGTTTTA CCCAACAAAA 
    TGTTTCTATA TGATGTACAA TATACACATA CATGCTGTTC TGGAGGAAGA 
    AGTTGGTTGT TTTTCCGTGC C

    Gene models with high sequence identity

    1. AT4G24990.1 [+] show detail - Ubiquitin family protein
      E-value: 4e-35; Score: 145.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.9e-41
    HMMPfam Glycine rich protein 2.7e-06
    superfamily Ubiquitin-like 8.7e-22

    See the detailed result >

    AT4G24990.1

    Model type
    Protein coding
    Short Description
    Ubiquitin family protein
    Curator Summary
    geranylgeranylated protein ATGP4
    Computational Description
    ATGP4; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 4 precursor (TAIR:AT3G26980.1); Has 159 Blast hits to 159 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR