K06320

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06320

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06320

Determination of introduced cDNA(s)

  • J033068O15 - Rice Full-length cDNAs - Original: J033068O15

    full reading [+] show sequence

    Nucleotide sequence: J033068O15 - full reading 
    GAATCTCATC ACCATCGAAT CATCAGCATA CACACGATGG CGTCCCAACG 
    CCGGCGATCA TCTGCCACCG CCGTCCTCCT CTCCTTGCTA CTGCTCCTCC 
    AGTTGGCCGC CGCCTATCCT CAAGGAAAGA GGCAGAACGT CGCCGTCTTC 
    TGGGGCCGCA ACAAGGCCGA GGGCTCGCTC CGGCAAACCT GCGACACCGG 
    CGACTACAAC ATCGTCATCA TCTCCTTCCT CAGCGTCTTC GGCCACGGCA 
    AATACTGGCT CGACCTCTCC GGCCACGACC TTCGCGACGT CGGCGCCGAC 
    ATCCGCCACT GCCAGTCCAA GGGCGTCTAC ATGCTCCTCT CCATCGGCGG 
    CGACGGCTAC CAATACTCCC TCCCTTCCTC CAAGTCCGCC GCCGACGTCG 
    CCGAAAACCT CTACTACTCC GTCCTCGGCG GCGACCGCCC CGGCGCCTTC 
    CACCCCTTCG GCGACGACAC CATCGTCAAC GGCGTCGACT TCTTCATCGA 
    CAACGGCCCA GCCGACCACT ACGACGACCT CGCCAACCGC ATCAACGACT 
    ACAACCAGAA CATCCGCGAC CCCATCGGCA TCATGCTCAC GGCGACGGTG 
    AGGTGCTCCT ACCCTGACCC GAGGATGAAG GCGGCGCTGG ACACCAAGCT 
    GTTCCGGCGC ATCCACGTTC GCTTCTACGA CGACCCGAGC TGCTCCTATA 
    ACCACGCCGG GCTCGCCGGC GTCATGGCGC AGTGGAACAA GTGGTCGGCG 
    ACGTACCCCG ACGGGCAGAT CTTCCTGGGG GTCGTCGCGG CCAACTTGAC 
    GGGGAAGAAC GACATGGTCG CCGTCGGCGA GCTCCGCGAC AAGCTGCTGC 
    CGGCGGTGCA GAACACGGAT ACGTACGGAG GAGTGATGCT CTGGAACAGC 
    TACTACGACT CGCTCACTCA CTACGGCCGA TACGTCAAGG ACTTGGCTTG 
    ATATAATTAA TTAAACTCAA ATCAACCAAT AATTACTTGA GCCCGTGCAT 
    GCATGCATGC AGCTCAATCA CTATCTCAGT AATTACGGCG TCATGTGTTT 
    GATATAGGAA AGTAATCCCT ACGTAGGCCA TTCTCAACCC AATGACTAAG 
    ATGGTGTCTA TAGCATTAAA TAAGGTGCCA CCTAGAATGA AAAATGATGT 
    GACAAGTAAA TAAATGAGGA AAGAGAAGGA AATCATGTCT TGCATGAGAC 
    ATGGTTTCTA CACAACATCC AAGACATCAT GTGAGATAAT GAGTATTAAA 
    TTTAAGTATG GAATAGTAGT GTTTGCATTG G

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 4e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 9.5e-10
    Gene3D Glycoside hydrolase, subgroup, catalytic core 4.3e-87
    superfamily Glycoside hydrolase, catalytic core 1.3e-70

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR