K06235

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06235

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06235

Determination of introduced cDNA(s)

  • J013043F09 - Rice Full-length cDNAs - Original: J013043F09

    full reading [+] show sequence

    Nucleotide sequence: J013043F09 - full reading 
    GGCTCTCTCC CCGCCACGTC TCCCCTCCCC GGCCATGGGA GCGGCCATGC 
    TCCTCGCTCC CATGCCTCTC CTCCTCCTCG CCTCCACTCC CCTCGCCGCC 
    GTCCACCTCC CCACCCGCTG CCGCCTCCGC CTGCAGCTCC TCTCCCGCGC 
    CGCGCCCGAA GCCGCCTCCG CCACCACCAC CACCACCACC GCGCCCGACA 
    ACCACTTCTC TGTCGAGGAA TACCTCATCT CCAACTGCAA TCTCACCCAG 
    CCACAGGCCC ACAAGGCGTC CAAGAGCATC GCCCACCTCA AGTCCCGCTC 
    CAACCCCGAC GCCGTCCTCG CCTTCCTCGC CGACTTCGGC CTCTCCCCCA 
    AGGAGGTCGC GGCCATTGTT GCCTCCAACC CGCGCATCCT GTGCGCCCGC 
    ATCGACCGCT CCCTTGCACC CATCTGCTCG GAGCTCCGCG CCGTCGGCCT 
    CTCCCCCTCC CAGATCGCCC GCCTCGCCCA GATCACCGGC CGCTACTTCC 
    TCTGCCGCAG CTTCGTCTCC AAGGTGCGGT TCTGGCTCCC CCTCTTCGGC 
    TCATCGGAGA GGCTTCTCCA GGCCAGCGAC TGGAACTACT GGCTCCTCAC 
    CTCCGACCTC GAGAAGGTGG TCGAGCCCAA CGTCTCCTTC CTCAAGGAAT 
    GCGGGCTAAG TGCTCGTGAT ATTTCCAAGC TGCTCGTGGC CGCGCCGCGG 
    CTTGTCACCA TGCACCCGGA TTACGTCAAG GACGCCGTGC GGCGTGCCAT 
    CCAGCTCGGC GTGGCCCCGG GCTCCCAGAT GTTCCGGCAC GCGCTCTCCA 
    CCGCCGGCTG CATCGGCCAG GACAAGATCG ACGCCAAGGT CGCCGTCCTG 
    AAGGAGAGCC TCGGGTGGTC GCAGGAGGAG GTGAACCTGG CCGTGAGCAA 
    GGCGCCGCGG ATCCTGGTCG CGTCCGAGGA GAGGCTGCGC CGCACGCGGA 
    GTTCTTGATC GACGAGGTCG GGCTGCAGCC GCAGTACGTC GCGCGGCGGT 
    CGGTGCTGCT CATGTACAGC CTCGAGAGGA GGCTGGTGCC CCGCCATCTC 
    GTGGTGAAAC TTCTCAAGGA GAGGGGTCTG ATCGAGCAAG ACCGGTGCTT 
    CTTCAACGCG GTGGCGCCAA CTGAAGAGAA GTTCTTGGAG AAGTTTGTTG 
    TCCCCTTTGA GGGGTGCGTC CCGGGTCTCG CCGACGCCTA CGAGTCTGCC 
    TGTGCCGGGA AGACGCCGGT GCAAGCTGAG TAGTGACCGG ACTTGGGGGA 
    GAACAATGGA GGTGTGTATG TGTGTGTGTC TCACTTCCAT TGGATAACTT 
    CATTCTACTG ATCAACTATA GCAGGGATGG CAGATTCAAT TCATGGTCAT 
    TTTAGTGTAG GTTTCTTGCA GTTGACAAGG AGGTGGATGT GTATAACAAC 
    CTTGAGAACT GTTCAGTTGT GGTTGAACAA TGTTCAGTGG GTTTTCAT

    Gene models with high sequence identity

    1. AT5G07900.1 [+] show detail - Mitochondrial transcription termination factor family protein
      E-value: 8e-32; Score: 65.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mitochodrial transcription termination factor-related 9.7e-06
    HMMPfam Mitochodrial transcription termination factor-related 9.9e-08
    FPrintScan PRICHEXTENSN 2.5e-09
    FPrintScan PRICHEXTENSN 2.5e-09
    FPrintScan PRICHEXTENSN 2.5e-09
    FPrintScan PRICHEXTENSN 2.5e-09
    FPrintScan PRICHEXTENSN 2.5e-09

    See the detailed result >

    AT5G07900.1

    Model type
    Protein coding
    Short Description
    Mitochondrial transcription termination factor family protein
    Computational Description
    Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G21150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR