K05731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05731

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05731

Determination of introduced cDNA(s)

  • J033143C16 - Rice Full-length cDNAs - Original: J033143C16

    full reading [+] show sequence

    Nucleotide sequence: J033143C16 - full reading 
    GGCTGGAGTC ACCCGAAGAC CGATAACTCC TCGAAGAGGC ACTGTGCTGA 
    ACAAGGTAGC TGATCTTATT GACCCAGCTA CGGGCTGGTG GGATAAACCA 
    CTAGTGGAGG AGATTTTTTG GGAGTCTGAT GCCAGGAACA TTCTGGCCAT 
    CCCGGTGAGA TTAGACACAA ATGATTTTGT AGCCTGGCAT TTTGATACAA 
    GAGGAGTGTA CTCGGTCAAA TCTGCGTACC ATGTCCTGGA AGATCAAAGG 
    GAGAGATCGG CGAAGAAGCA AGAGGGCGGT TCATCCTCTG GAGCGGTGAA 
    CCAGCGGAAT TTCGAGTGGG ATAAAATCTG GAGTTTGCAA TGCATTCCTA 
    AAGTCAAACA GTTTATCTGG CGGCTTGCCC ATAACAGCCT CCCCCTGAAA 
    CTCAACATCA AAAGGAGAGT ACCAGACGCT GAAACTCTAT GCCCGGTCTG 
    CAAAAGGTTT GATGAGAATG GTGGACACTG CTTCCTGCAA TGCAAGCCCA 
    TGAAACTCTG CTGGAGAATT TTATGCCTTG AAGATATCCG TTTAAGCTTG 
    ACTCAGCTTG TTTCTGCTAG AGATGTGGTT CAGACCATTT TGAAGCTGGA 
    GAATGATCGA AGAATGGAGG TCTTCTTTCT TTTGTGGGTT TGGTGGTATG 
    CACGCAACAA GGTGAACTCG GGGGAGGACG TAATCAGAGT GGAAGAAGTG 
    GTCCACAAGG TGAAACAGCT GATCTGTGAT CATGCCTCTC TGCGCAAAGG 
    AAAACATCCC AAGGTGAATG TGCAAAGAAA TAAGTGGGTT CCCCCTGTAG 
    ATGGTAATCT GAAGCTCAAC TTTGATGGAG CCTTCCGAGC TGTAAACAAG 
    TCTGGTGGTT ATGATTTCCT GGTTCGTGAC CTCCGTGGAT GTGCTGTTCT 
    TGCGGGTGCC GGCTGCCTGG AACATGTACA TGATGCTTTT GCAGCTGAAG 
    CTGAAGCTGG TTTAGCAGGC CTAAAATCTG CTATTTCGCA TGGTATTAAC 
    TCTGTCCAGG TGGAAACTGA TTCACCATCC TAGTGAGAGC CTTTCACTCT 
    CATGAGTACG CTCTCTCTCC TTGCAGTTCT ATCGTAAGGG AGATCAAGGA 
    TCTCGTCCAT TTAAATTTTT CTAGTGTTGT GTTTAATTAT GCCCCGTGAT 
    CATGTAATGT GGCTGCGCAT AAGTTAGCTC AAATGGGTGT GTGCTGGGAA 
    TTGGGTCAAG CAAGTGTGTG GGCTGACCTG TCCCTGACAT TGTACAAACT 
    ATTGTGGATC GTGGTATCAC TGATCCTAGT ATTTAATAAA GCGCGCCGGT 
    TTAACCC

    Gene models with high sequence identity

    1. AT4G29090.1 [+] show detail - Ribonuclease H-like superfamily protein
      E-value: 3e-17; Score: 87.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RE 3.4e-16
    HMMPanther RNA-directed DNA polymerase (reverse transcriptase), related 3.4e-16

    See the detailed result >

    AT4G29090.1

    Model type
    Protein coding
    Short Description
    Ribonuclease H-like superfamily protein
    Computational Description
    Ribonuclease H-like superfamily protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 2218 Blast hits to 2138 proteins in 33 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 0; Plants - 2203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR