K05714

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05714

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05714

Determination of introduced cDNA(s)

  • J023004D09 - Rice Full-length cDNAs - Original: J023004D09

    full reading [+] show sequence

    Nucleotide sequence: J023004D09 - full reading 
    GATGGTTACC GTCTCCCTCC CAAAGCCCCG CCTGGTGATT CGCCGTCTCC 
    CTCCGTCGCC GTGCCTTCCC CCGCCACCGT CCTGCTCACC GGCGTTCCGC 
    CGGAACGACT TGAAGTCCAC CTCTCGAGCT CGGCGGCCTC CCCCTTAGGG 
    CAGAAGCGGA CGAGGCGAAT GGAAGAGGTT AGGGGCAGGG AGAGCAAAGA 
    CCACCGCGGC GGCGGCGGCG GCGGCGGAGG TGATGGGGAC GGCGAGCGGA 
    CGGGACGGTG GCGCGCCGAG GAGGTCATCG CTGGGAACCG CGCGGTTCTG 
    GAGGCTCTCC GGGAGCTCGT GATGTATCCT GTCCTCTACG CACGGGAGGC 
    CCGCGTGCTC GGCCTCAATT TTCCCAGAGG ATTGCTGCTC CACGGCCCCT 
    CTGGCACTGG AAAGAAAAGC ATGGTCCGAG CTGTTGTTCG AGAATGTAAT 
    GCCCACCTCA CAGTGATTGA TTCAATTTCT GTGCATAAAC CCCACGCTGG 
    AGAGGGGGAG AAGTTCATGC GAGAGGCTTT TACTGAAGCA TATTCCCAGG 
    CATCACAGGG TAGACCAGCC GTGATATTCA TTGATGAACT TGATGACATA 
    TGTCCACCGC GTGGCAGTAG GAGAGAGCAA GGGTCCCGCA TTGTTGGTCA 
    GCTGTTGACT CTGATGGACG GGAAGTCATC AAAGCTGCTT CCCCACCTAG 
    TTGTTGTTGC ATCTGCTACC AGGGTGGATG CTATTGAGTC AGCACTGCGA 
    AGGCCTGGGC GTTTTGACTC AGAGATAGAG GTTACTGTTC CTACAGCAGA 
    AGAAAGGTTC GAGATTCTTA AGCTTTATAC CAAGAATCTA CATCTTGGTG 
    AATGTGTTGA TCTTCAATCT GTTGCTGCAT CCTGCAATGG TTATGTTGGA 
    GCTGATTTAC AAGCTTTATG TCGAGAAGCT GCAAGACGTG CTTATGGTAG 
    ATTATCAAGC TCATCAGAGA GTGAGAATGT GCTAACGCTA ATCATGGAGG 
    ATTGGGAGTC TGCTAAATCT GTGGCCAAAA ATAGTGTGAC AAGAGGGGTA 
    ACTAAAGAAA TTCCAGCTGT TTCATGGGAT GATATAGGAG GTTTGAAAGC 
    TGTTAAGAAA AAACTTCAGC AAGCTGTTGA ATGGCCCATC AAGCATGCTG 
    CTTCATTTGA TAGACTTGGA ATATCACCTA TCCGTGGGGT GCTATTGCAT 
    GGTCCACCAG GGTGCTCAAA GACTACCCTT GCAAAGGCTG CTGCTCATGC 
    TGCCCAAGCT TCTTTCTTTT CATTAAGTGG TGCTGAGTTA TACTCCAAGT 
    ATGTTGGTGA AGGTGAAGCT TTGTTGCGAC GTACATTCCA GATGGCACGT 
    CTTGCTTCTC CAAGCATTAT ATTTTTTGAT GAGGCTGATG CAATTGCCCC 
    TAAAAGAACT GGTCCCAGCG GGAACTCTAG TGGCAATGCC ACGGTTGGAG 
    AAAGACTCTT ATCAACTCTA TTGACGGAAA TGGATGGTTT AGAACTGGCT 
    ACGGGAATTA TTGTATTGGC TGCTACTAAT CGCCCAAATG CAATTGATGC 
    TGCTCTTCTG CGCCCAGGGC GTTTCGATAT GGTTTTGTAT GTTCCACCAC 
    CAGATGCGGA AGGTCGATAT GAAATACTAC GCATCCATAC ACGCAAAATG 
    CCATTAGGAG ATGATGTGGA TCTTTGGAAG GTAGCAGAGC GTACCGAGCT 
    TTTCACGGGC GCAGATCTTG AAGGCCTGTC CAGGGAGGCG GGAATGGCTG 
    CCTTGAGGGA AAGTCTGAGG TCAGAGCGTT TTGTATGTGA CGATATTCAC 
    TTCCAGGCCG CGCTAAGATC CTTGCGTCCA TCACTTACAC AATCAGTGGT 
    TGATGAGTAC TCAAATGCAG CCATCCATGG TCCATTGACG AGGAGAAAAC 
    ACTAAAAGAT GTATTATTCT GGCGCACAAG CATCAGTGTC GCCCATTGTT 
    GATTCTGACT AGTTATCAGA ACATTGTATC ATCGGTCTGC TGTATATATT 
    GACCAAAGTT GTGACATGTT CCCATATGAT TGCC

    Gene models with high sequence identity

    1. AT2G03670.1 [+] show detail - cell division cycle 48B
      E-value: 7e-179; Score: 624.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan ATPase, AAA-type, conserved site 0
    HMMPanther SPERMATOGENESIS ASSOCIATED 5-LIKE 1 2.4e-260
    HMMPanther AAA-FAMILY ATPASE 2.4e-260
    superfamily P-loop containing nucleoside triphosphate hyd 2.6e-69
    superfamily P-loop containing nucleoside triphosphate hyd 9.1e-45
    Gene3D no description 1.2e-35
    Gene3D no description 1.3e-13
    Gene3D no description 1.4e-54
    Gene3D no description 5.8e-17
    HMMPfam ATPase, AAA-type, core 3.3e-29
    HMMPfam ATPase, AAA-type, core 9.6e-39
    HMMSmart ATPase, AAA+ type, core 4.2e-12
    HMMSmart ATPase, AAA+ type, core 1.1e-19

    See the detailed result >

    AT2G03670.1

    Model type
    Protein coding
    Short Description
    cell division cycle 48B
    Curator Summary
    CDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog B
    Computational Description
    cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR