K05632

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05632

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05632

Determination of introduced cDNA(s)

  • J023106G20 - Rice Full-length cDNAs - Original: J023106G20

    full reading [+] show sequence

    Nucleotide sequence: J023106G20 - full reading
    GAGAAGGTTG TCAATGTTCG GCTCTCCGCC GCACAGCCCA AGAATGTGCC 
    GACGCATGAT TCAGAGTCAA AGTTTATCAA GTATAAGCCA TCGCAGCAAT
    CGGCAGCCTT CAATTCAGGT GCCAAGGAGA GGATTATTAG GATGTCAGAG
    ATGGCTCAGG ATCCTCTTGA GCCACCGAAA TTCAAGCATA AGCGAGTGCC
    CCGCGCTTCT GGATCACCGC CTGTCCCAGT GATGCACTCG CCACCACGGC
    CAGTGACAGT GAAGGACCAG CAAGATTGGA AGATTCCACC ATGCATTTCA
    AATTGGAAAA ATCCAAAGGG TTACACCATA CCACTCGACA AGAGGTTGGC
    AGCTGATGGA AGGGGGCTGC AGGAGGTTCA AATTAATGGT AACTTTGCAA
    AGCTCTCTGA AGCACTGTAT GTGGCGGAGC AGAAGGCCAG GGAGGCAGTA
    CAGATGCGAT CCAAGGTGCA GAGGGAGCTG CAGCTGAAGG AGAAGGAGAG
    GAAGGAGCAA GAGCTAAGGG CACTTGCACA GAAGGCGCGC ATGGAGAGGA
    CTGGTGCCCC ACCTGCACCT ACAGGGGTTC CTGCTGGTGG TGGTAGAGGT
    GCTGTTGATG ACAGGGAGGA AGATATGGAT TTGGAGCAGC CTCGTGAGCA
    ACGAAGGGAG AGTAGAGAAG AAAGGGAAGC AAGGATTGAG CGTGACAGGA
    TTCGTGAGGA GAGGAGACGT GAGAGGGAGA GAGAGAGGAG GCTGGAGGCC
    AGGGATGCTG CAATGGGCAA GAAGAGTAAG CTCACTAGAG ACAGGGATCG
    TGATGTCAGT GAGAAGATTG CCCTGGGCAT GGCAAGCACT GGCGGTGCTA
    AAGGTGGGGA AGTCATGTAT GACCAGAGGT TGTTCAACCA GGATAAAGGA
    ATGGACTCTG GGTTTGCTAC AGATGATCAG TATAACATCT ACTCCAAGGG
    TCTCTTCACA GCGCAGCCAA CGCTATCCAC ACTTTACAGG CCTAAGAAGG
    ACGGTGATTC TGATGTGTAT GGCGATGCAG ATGAACAACT GGAGAAGGTT
    ATGAAGACAG ATAGGTTCAA ACCAGACAAA GGATTTTCTG GTGCTTCAGA
    GAGGTCTGGA AAGAGAGACA GACCTGTGGA GTTTGATAAA CAGGAGGAGA
    ATGATCCCTT CGGTCTTGAT CAGTTCTTGA CTGAAGTGAA GAAGGGGAAG
    AAAGCTGTTG AGAAGATTGG AAGCGGAGGA GCCATGAGGG CAAGTGGTGG
    ATCCTCAATG AGAGATGATT ACGAGGGTGG AGGATCTGGG AGGTCCCGCA
    TTAACTTTGA AAGAGGTCGT TGAGGTATTA GATCTGCATG TTTTGTTCAG
    AAGTTTCTCC ATGCATTCCA AATGTTATCT GGAGGGTATT CTGTTGAGAA
    TATCAACTTC TTGATGAGAG GACTTGATGT CTGAGTTGTC TTAATGCAAC
    GTCTACTTCC AAGGGGCATC TTAAGGAGTG TACCTGTTTA GATCCTGTGA
    TTATGCTTGT TGTTTATCTA TTTGTGGATG GATCTGTAAG CTTAACTTAT
    CATCATTCCA TATCCCTTAT ATTTTGTGGT GCTTTATGAA GTCTCGATGT
    GTCTGGCTGA CCTTACATTT TCTGGTACTG TACCAAGTCT TTAAGATGTA
    TCTGCCG

    Gene models with high sequence identity

    1. AT1G77180.2 [+] show detail - chromatin protein family
      E-value: 3e-138; Score: 489.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SKI-interacting protein, SKIP 7.7e-181
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam SKI-interacting protein SKIP, SNW domain 1.3e-65

    See the detailed result >

    AT1G77180.2

    Model type
    Protein coding
    Short Description
    chromatin protein family
    Curator Summary
    Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
    Computational Description
    SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR