K05608

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05608

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05608

Determination of introduced cDNA(s)

  • J023035O06 - Rice Full-length cDNAs - Original: J023035O06

    full reading [+] show sequence

    Nucleotide sequence: J023035O06 - full reading 
    GATCGATCCA TCCCTCTACC AACCAAGAAA CAAGAAACAT TACACCAAAA 
    AACTAGCTAG CTAGCCAATG GCCTCCATGT CCTCCTTCCG ACTTGCCGTG 
    GCGGCGGCTG CACTATTGGT CATTGGCTCA TGTGCCACAG AGCTCACCTT 
    CAAGGTTGCT GAGGGCTCTA GCGCCACTAG TCTGGAGCTC GTCACCAACG 
    TCGCCATCTC TGAGGTGGAG GTCAAGGAGA AGGGCGGCAA GGACTGGGTG 
    GGGCTCAAGG AGTCAGGCTC TAACACCTGG ACACTCAAAA GTGAAGCACC 
    ACTCAAGGGC CCCTTCTCCG TTCGCTTCCT TGTCAAGAAC GGTGGCTACC 
    GTGTCGTCGA TGATGTCATC CCTGAAAGCT TTACTGCCGG CTCTGAATAT 
    AAGAGTGGCA TCCAACTCTA AGTAACAGGC ATGCATACTC TTGTGTTGGG 
    TCATATTGGA ATTATGAACC TCTAAATAAT TATGTCTTAA AAGAGATCAC 
    TCCATGTTCG AGCGAACCAT TAATTAATTT TCTATTAATT AATTTTCTGT 
    GGTTATTTTT TTGTAATGGG CTAGTGGCAA AATAAGGCAT ACATGTGTAC 
    TCCAAAATAT TGCTGTGGAG CCATATGCAA AGCATGGTTT TGAATATATG 
    TTATTTATAT AAGATATATG GGAAAAAGTA TATTTGG

    Gene models with high sequence identity

    1. AT1G65680.1 [+] show detail - expansin B2
      E-value: 4e-06; Score: 48.50

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Pollen allergen Lol p2 1.2e-10
    FPrintScan Pollen allergen Lol p2 1.2e-10
    FPrintScan Pollen allergen Lol p2 1.2e-10
    FPrintScan Pollen allergen Lol p2 1.2e-10
    ProfileScan Pollen allergen/expansin, C-terminal 14.629
    HMMPfam Pollen allergen/expansin, C-terminal 3.5e-14
    superfamily Pollen allergen/expansin, C-terminal 2.1e-21
    Gene3D Pollen allergen/expansin, C-terminal 1.6e-22

    See the detailed result >

    AT1G65680.1

    Model type
    Protein coding
    Short Description
    expansin B2
    Curator Summary
    member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin B2 (EXPB2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 2190 Blast hits to 2184 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 26; Plants - 2110; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR