K05535

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05535

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05535

Determination of introduced cDNA(s)

  • J023108N22 - Rice Full-length cDNAs - Original: J023108N22

    full reading [+] show sequence

    Nucleotide sequence: J023108N22 - full reading 
    GCCCGCCGCC CGAGCTTATC TCCATCCTAC GAGCAGCGGC GCCGGCTCCG 
    GCGTCGGCGT CCCCCTGCTC CTTCCGCCGC CTCCTCGCTC TCGCCGGCCC 
    GTCCCTGGGG AATGCCCAGC TGAATTCAAT GGCTCAAGTT ACTGCGACCG 
    CGAATGCTCG GGTGCTCGGT TTTCCTGCCG CCAGCCGCCA TGGTGGCCCT 
    GTAGGATCGC GTGCTGGGCC GGCGTTTCTG AATCTGCGTG CTCCCGCACT 
    TCGTCATGAC AGTAAAAAGC ATCCTTTGAG AGTTGGTGCT GCCTCTTCAT 
    TATTCACAAA GTATGATCCT ATCAAAGGCA TCAAACCATT GCTGTCAATT 
    GACAAGTTAC GTCCTAGAAC TCAAGTTGGC TGTCGAGCAT CTTTATCATC 
    ATTCAGCTTC CCTGAGTTGG AGACCAAACC TAGATGGTGG TGGAGGACCT 
    TAGCGTGTGT CCCCTATCTT CTGCCGCTGC ACAACATGTG GTCCTTTGCA 
    GATGCTGTGT ACCAGCTTCA TCCATACTTG CAGCAGTTTG GGTTGTTCTA 
    TGCATTCATC GACACAATGG CGTTAGTCCC AGGATGGCTC TTTCTGATGA 
    TCTTCATGAC CGTCTACTTC TTTGTGGTCA GGCGGAAGTG GTTGCCACAC 
    TTCTTGCGGT ATCACGTCAT ATTGGCTATT CTCCTTGATA CTGGTTCTCA 
    AGCTCTGGCG ACCATGTGCA ACTGGAATCC AAGCATTGTT TATCAGGGTA 
    AACCAATGGT GTTTTTCTGG ATGACGATTG CCTTCATTCA GATATCCACA 
    GTTCTTGAGT GCATGAGGTG TGCTCTGGCA GGCATGTATC CCAGCGTTCC 
    GTTTGTATCT CAAACGGCTT TCATCCACTC TGATATGAGT ATGTTCAGGT 
    AGTTGGTTAG TGCAATATGC ATCTTTGAAT ATAAGAAGCA TTAAGGGATT 
    TTTATACGAG AGATTTGAAA CTGCTGAGAC AGTAAAATGT TGGGAATTAT 
    GAGGTACAAG AGGTGGGGAT GCAAGGGGAT GAAATCAGAG GCAATGCTTA 
    TTTGCAGTGT TGGCACTTCT

    Gene models with high sequence identity

    1. AT1G04940.1 [+] show detail - translocon at the inner envelope membrane of chloroplasts 20
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G04940.1

    Model type
    Protein coding
    Short Description
    translocon at the inner envelope membrane of chloroplasts 20
    Curator Summary
    Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.
    Computational Description
    translocon at the inner envelope membrane of chloroplasts 20 (TIC20); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3); Has 279 Blast hits to 278 proteins in 76 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR