K05320

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05320

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05320

Determination of introduced cDNA(s)

  • J023111J08 - Rice Full-length cDNAs - Original: J023111J08

    full reading [+] show sequence

    Nucleotide sequence: J023111J08 - full reading 
    GATTGCTCTC ATTGCATTGT CTCCTCTTCC TACTGCTGCT GCTGCTTTCT 
    CTCTCTAGGC TGCTTGCTTT GCTTGCCCCT CTCTCTCTCT CTATCTACAA 
    ATGTTCTCTT CTTTTGAGAG AAGAGAGGAA TAGCTGCAAC ACAAAGGAAG 
    GCACTGCTTG CACTGTGCAG TGTGCAGGCA CAGCCAAGTT TTCAAAAGAA 
    CCCGCCATCT TCTTTCTCTC TCTACTGTCC TAGCAATTCT CTCTCTAGCT 
    CCAGTATTAA TTTCTTTCCA TCCTCCATTT TCTTGGGCAC CGTGCGAGCT 
    TAGCTCTGCA CTGTTTGCCT CAGTTGGGTT GGTTTGGTTT GGTTGCTTCT 
    TCTCTGCTTC AACGGTTGGT CGACTTCAAT GCAAGAAAGC ATCGGCAGCA 
    ATTGCTCCTC CCGTTGAGTT TTTCGTCGTC GTTTGAAAGC GAAGGAGACG 
    GCGACGGCGA CGAGGAGGAG GAGGAGGGAT TAATGTCGTC CATGGCCTCC 
    AACGAAGAGG TCGGTAATGA AGATGGGAGG CAGGAGGATC TGCTTGTTAA 
    GGAAGGGCCA GGGGAGCACC AAGAAAACAC CATCAGAGAT TCCGACGAAG 
    CGAAAAATGA GGATTGCAGC AATAGCGGGT CAGTAACCGA AGCCGTCGTA 
    TCAAGCGAAG AACCCAGTGA CAGGAGCAGC ACTGAAGAAC CCAGTGACAG 
    GAGCAGTACT GAAGAACCCA GTGACAGTAG TAGTGGTGGT GACAGTAGCA 
    GCCAATCTGC TGATTCTGAT GGAGGTAGCA AAGAGGCGCC TAAGATGGAT 
    TCGAAGGCCG GTAACGATGA CAGCAGCGAG TGCACCGATC AGAGCTCTCC 
    TCGCGCGGTG CTAGACATCT CGGTATCCGG TAGTGTCGAC TCCGATGAGA 
    GCTCCTCCGT TGAGCAGCCA GCGGAGTCGA ATCACAATAC GCAGTGGAGG 
    AACCTGATCA GTGGATTGAT ACTCAGGAGG AGGAAGTCGA TGGCGAGAGC 
    GGGGACATTC CCTCAGAGAA CCAAGACCAC AGGGCTTAAG AGGTACCTGG 
    AGAGGATGCG GAGCGGCAAG AACCAGATCG ATTGCGGCGC CATTGCTCCT 
    GAGATCCTTC CTGAGATCAG CAAGTGGAGG CCATCATGGA GAAGCTTCGA 
    CTACAGTGAG CTTTGTGCTG CAACTGACAA ATTCAGTTCA GAAAATTTGA 
    TCGGAAAAGG CGGGCATGCT GAGGTGTACA AAGGACATCT TGCTGATGGA 
    CAATTTGTAG CAGTGAAGAG ACTAACAAAA GGTGGTAACA AAGAGGACAG 
    GATTAGCGAT TTCTTATCTG AGCTTGGAAT AATAGCTCAT GTTAACCATC 
    CAAATGCGGC ACAGCTCTTG GGGTTCAGTG TGGAAGGGGG CTTGCACTTG 
    GTTCTTCAGT TCTCACCTCA TGGAAGCCTG GCTTCTGTTC TTCATGCTGA 
    ACAGGCACAA AGGGAGCCCT CAAGTGGAAG GCTAGGTTCA ATATTGCTCT 
    TGGAATTGCT GAAGGACTGC TTTATCTACA TGAAGGCTGC CATCGACGCA 
    TAATTCACAG AGACATCAAA GCATCAAATA TCCTTCTAAC TGAAGATTAC 
    CAACCTCAGA TCTCAGATTT TGGACTTGCA AAGTGGCTTC CTGACAAATG 
    GACTCATCAT GTTGTGTTCC CCATTGAAGG G

    Gene models with high sequence identity

    1. AT5G18910.1 [+] show detail - Protein kinase superfamily protein
      E-value: 3e-62; Score: 118.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE/THREONINE PROTEIN KINASE-RELATED 1.1e-55
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.1e-55
    HMMPanther SERINE/THREONINE PROTEIN KINASE-RELATED 7.9e-47
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.9e-47
    superfamily Protein kinase-like domain 3.9e-21
    superfamily Protein kinase-like domain 1.5e-22
    Gene3D no description 1.6e-19
    Gene3D no description 8.5e-16
    PatternScan Serine/threonine-protein kinase, active site 0
    PatternScan Protein kinase, ATP binding site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1.6e-16
    HMMPfam Serine-threonine/tyrosine-protein kinase 7.3e-12
    ProfileScan Protein kinase, catalytic domain 16.301
    ProfileScan Protein kinase, catalytic domain 12.627

    See the detailed result >

    AT5G18910.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: peroxisome; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ROP binding protein kinases 2 (TAIR:AT3G05140.1); Has 112793 Blast hits to 111645 proteins in 4265 species: Archae - 108; Bacteria - 12991; Metazoa - 42065; Fungi - 9590; Plants - 31347; Viruses - 418; Other Eukaryotes - 16274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR